DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and unpg

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_477146.1 Gene:unpg / 35942 FlyBaseID:FBgn0015561 Length:485 Species:Drosophila melanogaster


Alignment Length:75 Identity:24/75 - (32%)
Similarity:37/75 - (49%) Gaps:0/75 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly   425 KRPRTILTSQQRKQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQN 489
            :|.||..||:|..:.:..|..........|..:|....||...|::||||:|||.|:::.....:
  Fly   320 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVKAGLTSH 384

  Fly   490 GGSGGGSGSG 499
            |....|:.||
  Fly   385 GLGRNGTTSG 394

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757
LIM 333..388 CDD:413332
Homeodomain 425..481 CDD:459649 19/55 (35%)
unpgNP_477146.1 Homeodomain 324..376 CDD:459649 17/51 (33%)
Blue background indicates that the domain is not in the aligned region.

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