DRSC/TRiP Functional Genomics Resources

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Protein Alignment Lmx1a and Lhx1

DIOPT Version :10

Sequence 1:NP_729801.1 Gene:Lmx1a / 39406 FlyBaseID:FBgn0052105 Length:640 Species:Drosophila melanogaster
Sequence 2:NP_665887.3 Gene:Lhx1 / 257634 RGDID:71074 Length:406 Species:Rattus norvegicus


Alignment Length:338 Identity:109/338 - (32%)
Similarity:148/338 - (43%) Gaps:71/338 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 CEGCGQKIHDRFLMNVGDANWHEQCLACCYCGMQLHHTCYVRNSKLYCKMDYDRLFGVKCSSCCH 339
            |.||.:.|.||||:||.|..||.:|:.||.|...|...|:.|..|||||.|:.|.||.||:.|..
  Rat     4 CAGCKRPILDRFLLNVLDRAWHVKCVQCCECKCNLTEKCFSREGKLYCKNDFFRCFGTKCAGCAQ 68

  Fly   340 AILPQELVMRPIPNFVFHLPCFVCYACRLPLQKGEQFMLRDGQLFCYRHDLEKEMFLAAAAAQHC 404
            .|.|.:||.| ..:.||||.||.|..|...|..||:..:.|...|..:.|......:|...:.|.
  Rat    69 GISPSDLVRR-ARSKVFHLNCFTCMMCNKQLSTGEELYIIDENKFVCKEDYLSNSSVAKENSLHS 132

  Fly   405 GFVGLD-------------------------------EEDLLRPRDGRRGPKR--PRTILTSQQR 436
            ...|.|                               |.|     |...|.||  |||.:.::|.
  Rat   133 ATTGSDPSLSPDSQDPSQDDAKDSESANVSDKEGGSNEND-----DQNLGAKRRGPRTTIKAKQL 192

  Fly   437 KQFKASFDQSPKPCRKVREALAKDTGLSVRVVQVWFQNQRAKMKKIQRKAKQNGGSGGGSGSGRG 501
            :..||:|..:|||.|.:||.||::|||::||:||||||:|:|    :|:.||....|       .
  Rat   193 ETLKAAFAATPKPTRHIREQLAQETGLNMRVIQVWFQNRRSK----ERRMKQLSALG-------A 246

  Fly   502 TGNSSATDDKDTNDKEDKCVKQEL---------GGDSSGYLG----------GLDSTFASQPLNP 547
            ..::.....:......|:....||         |...|.|.|          |..|:.|..|:  
  Rat   247 RRHAFFRSPRRMRPLVDRLEPGELIPNGPFSFYGDYQSEYYGPGGNYDFFPQGPPSSQAQTPV-- 309

  Fly   548 NLPFSPDDYPANS 560
            :|||.|...|:.:
  Rat   310 DLPFVPSSGPSGT 322

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Lmx1aNP_729801.1 LIM1_Lmx1b 275..327 CDD:188757 26/51 (51%)
LIM 333..388 CDD:413332 21/54 (39%)
Homeodomain 425..481 CDD:459649 30/57 (53%)
Lhx1NP_665887.3 LIM1_Lhx1_Lhx5 4..55 CDD:188753 25/50 (50%)
LIM2_Lhx1_Lhx5 63..118 CDD:188761 20/55 (36%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 128..189 12/65 (18%)
Homeodomain 181..237 CDD:459649 28/59 (47%)
dnaA <263..>382 CDD:455861 16/62 (26%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 294..372 9/31 (29%)

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