DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: CycA and SDS

Sequence 1:NP_524030.2 Gene:CycA FlyBaseID:FBgn0000404 Length:491 Species:Drosophila melanogaster
Sequence 2:NP_001322548.1 Gene:SDS AraportID:AT1G14750 Length:619 Species:Arabidopsis thaliana

Alignment Length:422 Identity:93/423 (22%)
Similarity:179/423 (42%) Gaps:92/423 (22%)


  Fly     3 SFQIHQDMSNKENPGIKIPAGVKNTKQPLAVIGG-KAEKNALAPRANFAVLN---GNNNVPRPAG 63
            |..::.:..|||:..:.:.:||:...:..:|.|| ..|:..::..::|...:   |:....:|  
plant   174 SRSLNFESENKESDVVSVISGVEYCSKFGSVTGGADNEEIEISKPSSFVEADSSLGSAKELKP-- 236

  Fly    64 KVQVFRDVRNLNVDENV----------EYGAKKSNVVPVVEQFKTFSVYEDNNDTQVAPSGKSLA 118
            ::::...|.:|...|..          |...::|.:         :|.|.|.:.:...||     
plant   237 ELEIVGCVSDLACSEKFSEEVSDSLDDESSEQRSEI---------YSQYSDFDYSDYTPS----- 287

  Fly   119 SLVDKENHDVKFGAGQKELVDYDLDSTPMSVTDVQSPMSVDRSILGVIQSSD----ISVGTETGV 179
                               :.:|..|.....:...||:|..||:  .:|..:    .::..:.|.
plant   288 -------------------IFFDSGSEFSEKSSSDSPISHSRSL--YLQFKEQFCRSTIPNDFGS 331

  Fly   180 SPTGRVKELPPRNDRQRFLEVVQYQMDILE----YFRESEKKHRPKPLYMR----------RQKD 230
            |....:..           |::::..:.:|    ..||.|:.|    .|||          ....
plant   332 SCEEEIHS-----------ELLRFDDEEVEESYLRLRERERSH----AYMRDCAKAYCSRMDNTG 381

  Fly   231 ISHNMRSILIDWLVEVSEEYKLDTETLYLSVFYLDRFLSQMAVVRSK-LQLVGTAAMYIAAKYEE 294
            :...:|||::.|:|:...:..|..|||:|.|..||||||:.:....: |.|||.|::.:|.:.||
plant   382 LIPRLRSIMVQWIVKQCSDMGLQQETLFLGVGLLDRFLSKGSFKSERTLILVGIASLTLATRIEE 446

  Fly   295 IYP-PEVGEFVFLTDD-SYTKAQVLRMEQVILKILSFDLCTPTAYVFINTY--AVLCDMPEKLKY 355
            ..| ..:.:..|...: .|::.:|:.||.::.::|:|...|||.:.|:..|  |...:...:.|.
plant   447 NQPYNSIRKRNFTIQNLRYSRHEVVAMEWLVQEVLNFKCFTPTIFNFLWFYLKAARANPEVERKA 511

  Fly   356 MTLYISELSLMEGETYLQYLPSLMSSASVALA 387
            .:|.::.||   .:|.|.:.||.:::|.|.||
plant   512 KSLAVTSLS---DQTQLCFWPSTVAAALVVLA 540

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CycANP_524030.2 Cyclin_N 206..332 CDD:278560 41/143 (29%)
Cyclin_C 334..450 CDD:281044 17/57 (30%)
SDSNP_001322548.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 O PTHR10177
Phylome 00.000 Not matched by this tool.
11.100

Return to query results.
Submit another query.