DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG32085 and SKP2A

DIOPT Version :10

Sequence 1:NP_729732.1 Gene:CG32085 / 39311 FlyBaseID:FBgn0052085 Length:666 Species:Drosophila melanogaster
Sequence 2:NP_564139.1 Gene:SKP2A / 838740 AraportID:AT1G21410 Length:360 Species:Arabidopsis thaliana


Alignment Length:386 Identity:90/386 - (23%)
Similarity:153/386 - (39%) Gaps:104/386 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly   280 IEQLM-----LDDRFLSRFFQYFSPYERRILAQVCIKWRDTLYRSPRYWSGLLPTLQCRELRQMP 339
            :|.||     :|||.:.            :.:.||..|||.:            :.....|| :.
plant    33 VELLMRILSLVDDRNVI------------VASGVCTGWRDAI------------SFGLTRLR-LS 72

  Fly   340 GCDRGKLYNSLIRRGFHALGLVGASDEDALDVVHSFPLASKHVHSLSLRCS--SISDRGLETLLD 402
            .|:..  .|||:                 |.:|..|    ..:.:|:||..  .:.|..:|.:.:
plant    73 WCNNN--MNSLV-----------------LSLVPKF----VKLQTLNLRQDKPQLEDNAVEAIAN 114

  Fly   403 HLQSLFELELAGCNEVTEAGLWA----CLTPRIVSLSLADCINIADEAVGAVAQLLPSLYEFSL- 462
            |...|.||:|:...::|:..|:|    |  |.:..|:|:.|.:.:|.|:..:.:....|...:| 
plant   115 HCHELQELDLSKSLKITDRSLYALAHGC--PDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLC 177

  Fly   463 ---QAYHVTDAALGYFSPKQSHSLSILRLQSCWELTNHGIVNIVHSLPHLTVLSLSGCSKLTDDG 524
               :|  |||.||.... ...:.:..|.|..|..:::.|::::.:..|.|..|.|.||..:||:.
plant   178 GCVKA--VTDNALEAIG-NNCNQMQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDES 239

  Fly   525 VELIAENLQKLRALDLSWCPRITDASLEYIA------------------CDLNQLEELTLDRCVH 571
            |..:|:....||:|.|.:|..|||.::..:|                  .|...|..|.:.:|..
plant   240 VVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTA 304

  Fly   572 ITDIGVGYISTMLSLTALFLRWCSQVRDFGLQHLCSMRNLQVLSLAGCPLLTSSGLSSLIQ 632
            :|...|..:             |.   .|...|.||.|:..|:|  ||..||:...:.::|
plant   305 LTPSAVQAV-------------CD---SFPALHTCSGRHSLVMS--GCLNLTTVHCACILQ 347

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG32085NP_729732.1 F-box_FBXL16 283..325 CDD:438899 10/46 (22%)
leucine-rich repeat 382..406 CDD:275381 6/25 (24%)
AMN1 383..600 CDD:187754 58/244 (24%)
leucine-rich repeat 431..456 CDD:275381 5/24 (21%)
leucine-rich repeat 457..482 CDD:275381 8/28 (29%)
leucine-rich repeat 483..508 CDD:275381 4/24 (17%)
leucine-rich repeat 509..534 CDD:275381 9/24 (38%)
leucine-rich repeat 535..560 CDD:275381 10/42 (24%)
leucine-rich repeat 561..585 CDD:275381 5/23 (22%)
leucine-rich repeat 586..610 CDD:275381 5/23 (22%)
leucine-rich repeat 636..661 CDD:275381
SKP2ANP_564139.1 F-box_AtSKP2-like 27..74 CDD:438932 13/65 (20%)
leucine-rich repeat 66..91 CDD:275381 9/48 (19%)
leucine-rich repeat 92..118 CDD:275381 6/25 (24%)
AMN1 <115..264 CDD:187754 44/153 (29%)
leucine-rich repeat 119..144 CDD:275381 8/26 (31%)
leucine-rich repeat 145..170 CDD:275381 5/24 (21%)
leucine-rich repeat 171..197 CDD:275381 8/28 (29%)
leucine-rich repeat 198..223 CDD:275381 4/24 (17%)
leucine-rich repeat 224..249 CDD:275381 9/24 (38%)
leucine-rich repeat 250..272 CDD:275381 9/21 (43%)
leucine-rich repeat 294..313 CDD:275381 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.