DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and Ddx39a

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_446015.2 Gene:Ddx39a / 89827 RGDID:619920 Length:427 Species:Rattus norvegicus


Alignment Length:381 Identity:120/381 - (31%)
Similarity:195/381 - (51%) Gaps:13/381 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNI 91
            |.:..|...||..:....|..|:::|...||.|:..||::.|:|||.|||.::|:|.:|...|..
  Rat    46 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPIN 110

  Fly    92 NQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRK--RMNESRVIIGTPGRL 154
            .|...:::..|||||.|:...:....|.....|.|.|.||..:.||..  :.|...|::|||||:
  Rat   111 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRI 175

  Fly   155 LHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAK 219
            |.|..:|..::..::..||||.|::.:...::..|.::....|..:|.:..|||..:.:.....|
  Rat   176 LALVRSRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRK 240

  Fly   220 VMDKPM-LISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQM 283
            .|..|| :..:.|....|.|::|:..:|....        |.:.|..:.:.|.:.|.:||..|..
  Rat   241 FMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE--------KNRKLFDLLDVLEFNQVVIFVKSVQ 297

  Fly   284 RADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINID 348
            |..:....|.........|...|.|.|||..::.:::|..||||||:|..||:|....|:|.|.|
  Rat   298 RCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYD 362

  Fly   349 PPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
            .|:|..|||||:.||||||:||:|:||::.:.:::...::..:...  :|.|.|:|
  Rat   363 MPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEV--NVAELPEE 416

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 120/381 (31%)
Ddx39aNP_446015.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..35
DEADc_DDX39 43..250 CDD:350708 63/203 (31%)
Q motif 44..72 6/25 (24%)
DECD box 195..198 2/2 (100%)
SF2_C_DEAD 261..390 CDD:350174 49/136 (36%)
Blue background indicates that the domain is not in the aligned region.

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