DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gem3 and UAP56b

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_001154706.1 Gene:UAP56b / 830990 AraportID:AT5G11200 Length:486 Species:Arabidopsis thaliana


Alignment Length:458 Identity:132/458 - (28%)
Similarity:212/458 - (46%) Gaps:70/458 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AGGEERSSDVAPGQV----KTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSK 70
            :|.:.....|..|.|    ..|.:..|...||..:..:.|..|:::|...||.|:..||:|.|:|
plant    27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAK 91

  Fly    71 SGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVA 135
            ||.|||.::|::.:|...|:..|..|:::..|||||.|:.:.|........|.|.|.|.||.::.
plant    92 SGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK 156

  Fly   136 --KDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPK 198
              ||..:.....:::|||||:|.|...:...:..:|..:|||.|::.::..::..|.::.:..|.
plant   157 IHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221

  Fly   199 NRQIIACSATYDQNLDERLAKVMDKPML----------------ISNSE---------------- 231
            ::|::..|||    |.:.:..|..|.|.                :.|||                
plant   222 DKQVMMFSAT----LSKEIRPVCKKFMQDFLENETVSVRLFSFGVENSEWRLCSFGFIVLVWVSM 282

  Fly   232 -RATVLLGIRQFVYE------------------------LPQQNNSVEEMRLKLQILGQIFNQLP 271
             ||.::...:..::|                        |.|....:.||. |.:.|..:.:.|.
plant   283 FRAILMFHSKTHIFEEKRWTRISPMEIYVDDEAKLTLHGLVQHYIKLSEME-KNRKLNDLLDALD 346

  Fly   272 YEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGV 336
            :.|.:||..|..||......|.........|...|.|.|||..::.::....||||||||:.||:
plant   347 FNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGI 411

  Fly   337 DSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLEF 401
            |....|:|||.|.|....|||||:|||||||:||:||||:||..:|:...::.::...  .:.|.
plant   412 DIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEV--DIKEL 474

  Fly   402 PKE 404
            |::
plant   475 PEQ 477

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 128/438 (29%)
UAP56bNP_001154706.1 DEADc_DDX39 45..249 CDD:350708 62/207 (30%)
PRK11776 53..476 CDD:236977 126/429 (29%)

Return to query results.
Submit another query.