DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and UAP56a

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_568244.2 Gene:UAP56a / 830986 AraportID:AT5G11170 Length:427 Species:Arabidopsis thaliana


Alignment Length:401 Identity:129/401 - (32%)
Similarity:206/401 - (51%) Gaps:15/401 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 AGGEERSSDVAPGQV----KTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSK 70
            :|.:.....|..|.|    ..|.:..|...||..:..:.|..|:::|...||.|:..||:|.|:|
plant    27 SGNKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVQHECIPQAILGMDVICQAK 91

  Fly    71 SGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVA 135
            ||.|||.::|::.:|...|:..|..|:::..|||||.|:.:.|........|.|.|.|.||.::.
plant    92 SGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNIK 156

  Fly   136 --KDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPK 198
              ||..:.....:::|||||:|.|...:...:..:|..:|||.|::.::..::..|.::.:..|.
plant   157 IHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPH 221

  Fly   199 NRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQIL 263
            ::|::..|||..:.:.....|.|..||.|...:.|.:.|      :.|.|....:.||. |.:.|
plant   222 DKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTL------HGLVQHYIKLSEME-KNRKL 279

  Fly   264 GQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVA 328
            ..:.:.|.:.|.:||..|..||......|.........|...|.|.|||..::.::....|||||
plant   280 NDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVA 344

  Fly   329 TDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIA 393
            |||:.||:|....|:|||.|.|....|||||:|||||||:||:||||:||..:|:...::.::..
plant   345 TDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFE 409

  Fly   394 TAWSVLEFPKE 404
            .  .:.|.|::
plant   410 V--DIKELPEQ 418

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 125/381 (33%)
UAP56aNP_568244.2 DEADc_DDX39 45..252 CDD:350708 63/206 (31%)
SF2_C_DEAD 263..392 CDD:350174 54/129 (42%)

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