DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and LOS4

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_190879.1 Gene:LOS4 / 824477 AraportID:AT3G53110 Length:496 Species:Arabidopsis thaliana


Alignment Length:451 Identity:124/451 - (27%)
Similarity:203/451 - (45%) Gaps:69/451 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    16 SSDVAPGQVKTFEELRLYRNLLNGL-KRNNFVTPTKIQAAAIPMALA--KMDLIIQSKSGTGKTL 77
            |.|........||:|.|...|:.|| ....|..|:||||.::||.:.  ...||.|:.:|:|||.
plant    82 SGDTPYTSASRFEDLNLSPELMKGLYVEMKFEKPSKIQAISLPMIMTPPHKHLIAQAHNGSGKTT 146

  Fly    78 IYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGT---------- 132
            .:|:.::...:|.:.:|.|:.:.||||||.|..:..         .|...|.|.|          
plant   147 CFVLGMLSRVDPTLREPQALCICPTRELANQNMEVL---------QKMGKFTGITAELAVPDSTR 202

  Fly   133 -DVAKDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAM 196
             ..|..|.....:.|:|||||.|......:...::.|::||.||||.:..|...:....|:::.:
plant   203 GAPAATRGAPVSAHVVIGTPGTLKKWMAFKRLGLNHLKILVFDEADHMLATDGFRDDSLKIMKDI 267

  Fly   197 PK---NRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRL 258
            .:   |.|::..|||:::.:.:.:|:.:..|..:........|..::|:....|::.|.:|.::.
plant   268 GRVNPNFQVLLFSATFNETVKDFVARTVKDPNQLFVKREDLALDSVKQYKVVCPKEQNKIEVIKD 332

  Fly   259 KLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTM 323
            ::..||.|      .|.|||..::..|......|...|.|...:.|.:.:|:|..:.:.::....
plant   333 QIMELGDI------GQTIIFVKTKASAQKVHKALAEMGYDVTSVHGNLTESDRDKIVKEFKECLT 391

  Fly   324 RILVATDLMARGVDSPHANLVINIDPP-------QDHVTYLHRIGRAGRFGSKGIAITFIASKKE 381
            ::|:|||::|||.|....|||:|.:.|       .|:..||||:|||||||.||.....:     
plant   392 QVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEPDYEVYLHRVGRAGRFGRKGAVFNLL----- 451

  Fly   382 SQRFREMSKKIATAWSVLEFPKEPMPNEFNFWDFEKYNFDYYIKE---ENPLQEMPMPIKE 439
                      :...|.     ||.|..      .||| |:..:||   .|..:|....:||
plant   452 ----------LDDGWD-----KEVMEK------IEKY-FEANVKEIKSWNSEEEYKSALKE 490

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 112/406 (28%)
LOS4NP_190879.1 DEADc_DDX19_DDX25 98..301 CDD:350721 59/211 (28%)
SF2_C_DEAD 313..451 CDD:350174 45/143 (31%)

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