DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and Ddx19b

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:XP_008770756.1 Gene:Ddx19b / 690693 RGDID:1593382 Length:492 Species:Rattus norvegicus


Alignment Length:382 Identity:133/382 - (34%)
Similarity:206/382 - (53%) Gaps:22/382 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAK--MDLIIQSKSGTGKTLIYVIAVVQS 86
            ||:||||||...||.|:....|..|:|||..|:|:.||:  .:||.||:||||||..:|:|::..
  Rat   104 VKSFEELRLKPQLLQGVYAMGFNRPSKIQENALPLMLAEPPQNLIAQSQSGTGKTAAFVLAMLSQ 168

  Fly    87 FNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNESRVIIGTP 151
            ..|..|.|..:.:.||.|||:|.......:.|.:.:.|.:..:.|..:.:.:| :.| :::||||
  Rat   169 VEPANNHPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQK-VGE-QIVIGTP 231

  Fly   152 GRLLHLYENRVF-DVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDE 215
            |.:|.......| |..|:::.||||||.:..|:..|....::...:|:|.|::..|||::.::.:
  Rat   232 GTVLDWCSKMKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWK 296

  Fly   216 RLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFAS 280
            ...||:..|.:|........|..|:|: |.|   .|:.||   |.|.|..::..:...||:||..
  Rat   297 FAQKVVPDPNIIKLKREEETLDTIKQY-YVL---CNNREE---KFQALCNLYGAITIAQAMIFCH 354

  Fly   281 SQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVI 345
            ::..|......|:..|....|:||.|...:|..|.|.:|....::||.|::.|||:|....::||
  Rat   355 TRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVI 419

  Fly   346 NIDPP------QDHVTYLHRIGRAGRFGSKGIAITFIASKKES---QRFRE-MSKKI 392
            |.|.|      .|:.||||||||.||||.:|:|:..:.||...   .|.:| .:|||
  Rat   420 NFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNILNRIQEHFNKKI 476

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 131/380 (34%)
Ddx19bXP_008770756.1 DEAD-like_helicase_N 88..316 CDD:475120 73/213 (34%)
SF2_C_DEAD 320..456 CDD:350174 52/142 (37%)

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