DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and Eif4a3

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_001093628.1 Gene:Eif4a3 / 688288 RGDID:1591139 Length:411 Species:Rattus norvegicus


Alignment Length:423 Identity:130/423 - (30%)
Similarity:209/423 - (49%) Gaps:49/423 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    18 DVAPGQVKTFEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIA 82
            ||.|    ||:.:.|..:||.|:....|..|:.||..||...:...|:|.||:||||||..:.|:
  Rat    35 DVTP----TFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATFSIS 95

  Fly    83 VVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRKRMNESR-V 146
            |:|..:..:.:..|:|:.||||||:|:|.....| ..:.:.:|.|.||||:|.:|.::::..: |
  Rat    96 VLQCLDIQVRETQALILAPTRELAVQIQKGLLAL-GDYMNVQCHACIGGTNVGEDIRKLDYGQHV 159

  Fly   147 IIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQ 211
            :.|||||:..:...|......:::|||||||::. .|..:..:..:...:|...|::..|||...
  Rat   160 VAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEML-NKGFKEQIYDVYRYLPPATQVVLISATLPH 223

  Fly   212 NLDERLAKVMDKPMLISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAI 276
            .:.|...|.|..|:.|........|.||:||..       :||....|...|..:::.|...||:
  Rat   224 EILEMTNKFMTDPIRILVKRDELTLEGIKQFFV-------AVEREEWKFDTLCDLYDTLTITQAV 281

  Fly   277 IFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHA 341
            ||.:::.:.|.....:..:......:.|.|.|.||..:.:.:|:...|:|::||:.|||:|.|..
  Rat   282 IFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQV 346

  Fly   342 NLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKEPM 406
            :|:||.|.|.:...|:|||||:||:|.||:||.|:  |.:..|...                   
  Rat   347 SLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFV--KNDDIRILR------------------- 390

  Fly   407 PNEFNFWDFEKYNFDYYIKEENPLQEMPMPIKE 439
                   |.|:|       ....:.||||.:.:
  Rat   391 -------DIEQY-------YSTQIDEMPMNVAD 409

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 120/383 (31%)
Eif4a3NP_001093628.1 DEAD-like_helicase_N 35..411 CDD:475120 130/423 (31%)
Q motif 38..66 10/31 (32%)
DEAD box. /evidence=ECO:0000305 187..190 2/2 (100%)

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