DRSC/TRiP Functional Genomics Resources

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Protein Alignment Gem3 and CG7878

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_649767.1 Gene:CG7878 / 40959 FlyBaseID:FBgn0037549 Length:703 Species:Drosophila melanogaster


Alignment Length:415 Identity:123/415 - (29%)
Similarity:200/415 - (48%) Gaps:40/415 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 EERSSDVAPGQVKTFEE-LRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKT 76
            |..:|...|..|.|||: ...|.::|..:.:..|..|:.||:.|.|:.|...|:|..:::|||||
  Fly   270 EGETSPPIPNPVWTFEQCFAEYPDMLEEITKMGFSKPSPIQSQAWPILLQGHDMIGIAQTGTGKT 334

  Fly    77 LIYVI-----AVVQSFNPNINQ--PHAMIVVPTRELAIQVQDTFFHLCK-SFRDFKCSAFIGGTD 133
            |.:::     ...|| .|...:  .:.:::.||||||:|::   ..:.| |||..|.....||.:
  Fly   335 LAFLLPGMIHTEYQS-TPRGTRGGANVLVLAPTRELALQIE---MEVKKYSFRGMKAVCVYGGGN 395

  Fly   134 ---VAKDRKRMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEA 195
               ...|.:|..|  :||.|||||..|....|.|||.:..|||||||::.. ...:..:.|::..
  Fly   396 RNMQISDLERGAE--IIICTPGRLNDLIMANVIDVSTITYLVLDEADRMLD-MGFEPQIRKVMLD 457

  Fly   196 MPKNRQIIACSATYDQNLDERLAKVMDKPMLIS-NSERATVLLGIRQFVYELPQQNNSVEEMRLK 259
            :..:||.|..|||:...:.......|..|:.:. .|........::|.:..:.      ::|...
  Fly   458 IRPDRQTIMTSATWPPGVRRLAQSYMKNPIQVCVGSLDLAATHSVKQIIKLME------DDMDKF 516

  Fly   260 LQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMR 324
            ..|...:.|....::.|||...::|||...:.||..|.....|.|..:|.:|.......::..:|
  Fly   517 NTITSFVKNMSSTDKIIIFCGRKVRADDLSSELTLDGFMTQCIHGNRDQMDREQAIADIKSGVVR 581

  Fly   325 ILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFRE-- 387
            ||||||:.:||:|......|||.|.|.:...|:||:||.||.|.:|.:|:|..        ||  
  Fly   582 ILVATDVASRGLDIEDITHVINYDFPHNIEEYVHRVGRTGRAGRQGTSISFFT--------REDW 638

  Fly   388 -MSKKIATAWSVLEFPKEPMPNEFN 411
             |:|::.   .:|:..::.:|:|.:
  Fly   639 AMAKELI---EILQEAEQEVPDELH 660

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 118/398 (30%)
CG7878NP_649767.1 KH_1 92..152 CDD:459630
DEAD-like_helicase_N 174..663 CDD:475120 123/415 (30%)
Blue background indicates that the domain is not in the aligned region.

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