Protein Alignment Gem3 and ddx39b

DIOPT Version :10

• Sequence 1: NP_524019.1
• Gene: Gem3 / 39195
• FlyBaseID: FBgn0011802
• Length: 1028
• Species: Drosophila melanogaster
• Sequence 2: NP_957237.1
• Gene: ddx39b / 393917
• ZFINID: ZDB-GENE-040426-1259
• Length: 435
• Species: Danio rerio
• Alignment Length: 381
• Identity: 117/381 - (30%)
• Similarity: 196/381 - (51%)
• Gaps: 13/381 - (3%)

  Fly    27 FEELRLYRNLLNGLKRNNFVTPTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNI 91
            |.:..|...||..:....|..|:::|...||.|:..||::.|:|||.|||.::|:|.:|...|..
Zfish    54 FRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVT 118

  Fly    92 NQPHAMIVVPTRELAIQVQDTFFHLCKSFRDFKCSAFIGGTDVAKDRK--RMNESRVIIGTPGRL 154
            .|...:::..|||||.|:...:....|.....|.:.|.||..:.||.:  :.....|::|||||:
Zfish   119 GQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTPGRI 183

  Fly   155 LHLYENRVFDVSKLRLLVLDEADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAK 219
            |.|..|:..::..::..:|||.|::.:...::..|.::....|..:|::..|||..:.:.....|
Zfish   184 LALSRNKSLNLRHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 248

  Fly   220 VMDKPM-LISNSERATVLLGIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQM 283
            .|..|| :..:.|....|.|::|:..:|....        |.:.|..:.:.|.:.|.:||..|..
Zfish   249 FMQDPMEIFVDDETKLTLHGLQQYYVKLKDNE--------KNRKLFDLLDVLEFNQVVIFVKSVQ 305

  Fly   284 RADSYKNYLTASGIDCHLISGAMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINID 348
            |..:....|.........|..||.|.|||..::.:::|..||||||:|..||:|....|:..|.|
Zfish   306 RCIALAQLLVEQNFPAIAIHRAMPQDERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYD 370

  Fly   349 PPQDHVTYLHRIGRAGRFGSKGIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
            .|:|..|||||:.||||||:||:||||::.:.:::...::..:...  ::.|.|:|
Zfish   371 MPEDSDTYLHRVARAGRFGTKGLAITFVSDENDARTLNDVQDRFEV--NISELPEE 424

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Gem3	NP_524019.1	SrmB	26..409	CDD:440279	117/381 (31%)
ddx39b	NP_957237.1	DEADc_DDX39	51..258	CDD:350708	60/203 (30%)
		SF2_C_DEAD	269..398	CDD:350174	50/136 (37%)