DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Gem3 and Ddx39b

DIOPT Version :10

Sequence 1:NP_524019.1 Gene:Gem3 / 39195 FlyBaseID:FBgn0011802 Length:1028 Species:Drosophila melanogaster
Sequence 2:NP_579834.2 Gene:Ddx39b / 114612 RGDID:70923 Length:428 Species:Rattus norvegicus


Alignment Length:425 Identity:122/425 - (28%)
Similarity:207/425 - (48%) Gaps:32/425 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 EREIAHSLAGGEERSSDVAPGQVKT-------------------FEELRLYRNLLNGLKRNNFVT 47
            |.::.:.|...|:...:.|.|...|                   |.:..|...||..:....|..
  Rat     3 ENDVDNELLDYEDDEVETAAGADGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCGFEH 67

  Fly    48 PTKIQAAAIPMALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDT 112
            |:::|...||.|:..||::.|:|||.|||.::|:|.:|...|...|...:::..|||||.|:...
  Rat    68 PSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKE 132

  Fly   113 FFHLCKSFRDFKCSAFIGGTDVAKDRK--RMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDE 175
            :....|...:.|.:.|.||..:.||.:  :.|...:::|||||:|.|..|:..::..::..:|||
  Rat   133 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197

  Fly   176 ADQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPM-LISNSERATVLLGI 239
            .|::.:...::..|.::....|..:|::..|||..:.:.....|.|..|| :..:.|....|.|:
  Rat   198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL 262

  Fly   240 RQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTASGIDCHLISG 304
            :|:..:|....        |.:.|..:.:.|.:.|.:||..|..|..:....|.........|..
  Rat   263 QQYYVKLKDNE--------KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHR 319

  Fly   305 AMEQSERLHVFEGYRNFTMRILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSK 369
            .|.|.|||..::.:::|..||||||:|..||:|....|:..|.|.|:|..|||||:.||||||:|
  Rat   320 GMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 384

  Fly   370 GIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
            |:||||::.:.:::...::..:...  ::.|.|.|
  Rat   385 GLAITFVSDENDAKILNDVQDRFEV--NISELPDE 417

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Gem3NP_524019.1 SrmB 26..409 CDD:440279 117/401 (29%)
Ddx39bNP_579834.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..31 6/27 (22%)
DEADc_DDX39 44..251 CDD:350708 60/206 (29%)
Q motif 45..73 6/27 (22%)
DECD box 196..199 2/2 (100%)
SF2_C_DEAD 262..391 CDD:350174 49/136 (36%)

Return to query results.
Submit another query.