DRSC/TRiP Functional Genomics Resources

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Protein Alignment: Ubc4 and ubc-6

Sequence 1:NP_001287013.1 Gene:Ubc4 FlyBaseID:FBgn0015321 Length:199 Species:Drosophila melanogaster
Sequence 2:NP_001040755.1 Gene:ubc-6 WormBaseID:WBGene00006703 Length:314 Species:Caenorhabditis elegans

Alignment Length:152 Identity:41/153 (27%)
Similarity:66/153 (43%) Gaps:19/153 (12%)


  Fly     3 NMAVSRIKREFKEVMRSEEIVQCSIKIELVNDSWTELRGEIAGPPDTPYEGGKFVLEIKVPETYP 67
            |..|.|:.:|..|:.:..|:...    :.:.|:..|....|.|...|.:|||.:...|..|..||
 Worm     9 NAGVRRLMKEAMELRQPTEMYHA----QPMEDNLFEWHFTIRGTLGTDFEGGIYHGRIIFPADYP 69

  Fly    68 FNPPKVRFITRIWHPN-ISSVTGAICLDIL---KDNWAAAMTLRTVLLSLQALLAAAEPDDPQDA 128
            ..||.:..:|    || ...:...:||.|.   .:.|..:.::||.||:|...|    |..|..|
 Worm    70 MKPPNLILLT----PNGRFELNKKVCLSISGYHPETWLPSWSIRTALLALIGFL----PSTPGGA 126

  Fly   129 V--VAYQFKDKYDLFLLTAKHW 148
            :  :.|..|::..|..|:.: |
 Worm   127 LGSLDYPPKERQRLAKLSCE-W 147

Known Domains:


GeneSequenceDomainRegion External IDIdentity
Ubc4NP_001287013.1 COG5078 1..153 CDD:227410 41/153 (27%)
UQ_con 8..149 CDD:278603 39/148 (26%)
UBA_II_E2_UBCD4 163..198 CDD:270574
ubc-6NP_001040755.1 UBCc 12..>121 CDD:238117 33/121 (27%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 1 0.900 E1_COG5078
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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