DRSC/TRiP Functional Genomics Resources

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Protein Alignment: CG3448 and XRCC4

Sequence 1:NP_648316.1 Gene:CG3448 FlyBaseID:FBgn0035996 Length:235 Species:Drosophila melanogaster
Sequence 2:NP_001154639.1 Gene:XRCC4 AraportID:AT3G23100 Length:264 Species:Arabidopsis thaliana

Alignment Length:257 Identity:55/258 (21%)
Similarity:104/258 (40%) Gaps:49/258 (19%)


  Fly     2 STFVVKLLQRSQLSHS----QIDVKPFIYVRSKWMDDDVEFDILTTSDNQNYRSIVKYDEFRSGA 62
            :||:..:::..:..|:    :|.....|:|:..|.:.  .|||..|..:.::......:|....|
plant    11 TTFIETMVESEKTKHTCLRLEISGADPIFVKGTWHNS--RFDISVTDGSSSWICNATEEEVAERA 73

  Fly    63 SELEQAYDAFFAECKSAVTTHMGLQGFDYEISMEDV-----------EKPAFKV---YKCEGYET 113
            ::.:|.    .:|.......::|.|..:...|..|.           ||...|:   :||:..: 
plant    74 AQWDQP----VSEYLKLAEQYLGFQQPNSVYSFSDALEGSKRLSWTFEKEGTKLEWRWKCKPSD- 133

  Fly   114 LYLDVPLRKVSNCYQMLDAAIEAG-------QQKPQAAPATESDAQTTASLAEYEKYVRDSKLKE 171
                 ..:|::  ..:||..:||.       ..|.::.....|:|:  ..||:.||...:....|
plant   134 -----DSKKIT--VGILDFLMEANIRLSEEVVNKTRSFEKMRSEAE--RCLAQGEKLCDEKTEFE 189

  Fly   172 EELLKKFLLLLNSKKAHIRDLES-----QLEKRSGKVSRAKNNQRIFSDD---EDDAYGAAT 225
            .....|||.:||:|||.:|.|..     ::.:......:|::.:...|||   |::|...||
plant   190 SATYAKFLSVLNAKKAKLRALRDKEDSVRVVEEEESTDKAESFESGRSDDEKSEEEASKKAT 251

Known Domains:


GeneSequenceDomainRegion External IDIdentity
CG3448NP_648316.1 None
XRCC4NP_001154639.1 XRCC4 47..>256 CDD:284132 48/222 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 LDO PTHR28559
Phylome 00.000 Not matched by this tool.
11.100

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