DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and lgc-36

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001023766.1 Gene:lgc-36 / 3565335 WormBaseID:WBGene00008551 Length:536 Species:Caenorhabditis elegans


Alignment Length:343 Identity:103/343 - (30%)
Similarity:182/343 - (53%) Gaps:14/343 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    58 NISAILDSFSVSYDKRVRPNY-GGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAY 121
            |::.:|::...:||:..||.: .|.|.:|.:.:::.::..:|::...::.:.||||.|||.||.:
 Worm    61 NVTHLLNNVLKNYDQHFRPGFNSGKPTKVYIDLFIRTMGPVSDLFNTYSFNCYFRQKWTDDRLHF 125

  Fly   122 RKRP-GVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC 185
            .... |...||:....:..||.|||:|.|...||.|..||||..:|:...|:|..|.|:|:.|.|
 Worm   126 NNSGIGFRQLSLSMAMLDKIWKPDTYFWNGAGSYVHGITTSNRLVRLEPDGTILYSSRITVKAKC 190

  Fly   186 PMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWR----DGLSSVGMSSEVELPQFRVLGHRQRATE 246
            .|::..:|:|:|.|.:.|.|:.|:..:::|.||    |....:...|..:||||.:.|.:. ...
 Worm   191 QMDMSRYPLDKQACRLVIGSYAYSSDEVQYKWRIMGDDNGVKIDYESIADLPQFSLSGFKV-YKP 254

  Fly   247 INLTTG-NYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTM 310
            .|:|.. .||.|.....|.|..||:|:..|:|..|:|::.||:|:..|.||..|:.:|:|.|||:
 Worm   255 ANITRDKEYSALEVRFYFDRHFGYFLMNFYVPCALVVLLCWVAFFTKREATAERIGIGITNVLTI 319

  Fly   311 TTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQK 375
            ..:...:.:..||:....:::|::..|::.....::|:..|.|..|......:    ||::..::
 Worm   320 VLISMDSKSDSPKVDSPTALEVFIWICYLTHLICMVEFTVVHYHTKYNTGDPE----IQEVERER 380

  Fly   376 KQQLDGANQQQANPNPNA 393
            .:|:  ..|...|.|..|
 Worm   381 LRQI--IKQIPKNTNNRA 396

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 60/188 (32%)
Cys-loop 185..199 CDD:349809 5/13 (38%)
Neur_chan_memb 274..588 CDD:460753 31/120 (26%)
lgc-36NP_001023766.1 LIC 48..520 CDD:455710 103/343 (30%)
LGIC_ECD_GABAR_GRD-like 86..275 CDD:349808 61/189 (32%)
Cys-loop 190..204 CDD:349808 5/13 (38%)

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