Protein Alignment Rdl and CG6927

DIOPT Version :10

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_572194.1
• Gene: CG6927 / 31419
• FlyBaseID: FBgn0029733
• Length: 524
• Species: Drosophila melanogaster
• Alignment Length: 582
• Identity: 135/582 - (23%)
• Similarity: 226/582 - (38%)
• Gaps: 142/582 - (24%)

  Fly    55 GD-VNISAILD--SFSVSYDKRVRP-NYGGP----PVEVGVTMYVLSISSLSEVKMDFTLDFYFR 111
            || ::.:.:||  :....||:..|| .|...    ||:|.:..|:..:.:|....:.|.:....:
  Fly    31 GDSLSQTQLLDRLTHGCRYDRLERPITYSETGQRLPVDVYMRAYIYFMQNLEAHDLQFKIYALLQ 95

  Fly   112 QFWTDPRLAYRK-RPGVETLSVGSEFIKN-IWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSIT 174
            ..:.||||.:|. .|......:|.|.::| :|:|..|..||:.|.....|..:....:...|::.
  Fly    96 MRYLDPRLNFRNVSPKRRQPILGEEHLRNSLWMPHIFLANERDSSILGLTEKDILTSISPDGTVI 160

  Fly   175 RSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLG 239
            .|.|:..|..|.:||:.||.|.|.|...:||:.|...::...| :....:.....:.|.:|.:..
  Fly   161 VSNRIKATLYCWLNLKKFPFDEQHCSTVLESWMYNTSELVLHW-EQKRPITYDGALHLTEFVLQR 224

  Fly   240 HRQRATEINLT---------TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNA 295
            .....|.||..         .||||.|:..:...|.:|:||:..::||.|||.||||||||..:.
  Fly   225 SWSNETVINADLSDLRHGAFAGNYSSLSFTVHLTRVVGFYLMDYFLPSMLIVAISWVSFWLQADQ 289

  Fly   296 TPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQM 360
            .|.|:.||.:|:||..||.|:....|||:||:|..:|:...|.:.:|.|::|:|.|..:     .
  Fly   290 APPRITLGTSTLLTFITLASAQGKTLPKVSYIKVSEVWFLGCTIFIFGSMVEFAFVNTI-----W 349

  Fly   361 RKQRFMAIQKIAEQKKQQLDGANQQQANPNPN---------------------ANVGGPGGVGVG 404
            |:::.:.::|        |:..:..::..:||                     |:.|..||.|.
  Fly   350 RRKKSVPVKK--------LNSKHILKSTLSPNLLRRRSHARSRSFSGTALHKTADTGSLGGAGF- 405

  Fly   405 PGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSI 469
                                           :::...:.|..|:....:    :.|...:|....
  Fly   406 -------------------------------NNYLTVNLPITTIKEGQV----LDQQRTSRVVQK 435

  Fly   470 VGPLFQEVRF----KVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGGGP 530
            :...|.|..|    ......|.|...:.:...|..|
  Fly   436 MDVNFVESAFGSMGSAQSTGAISAASSSQTLTNNNR----------------------------- 471

  Fly   531 PEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSD----IDKYSRIVFPVCFVCFNLMYW 588
            .|..|..|..               |::....:||.:    ||..:|.|||:.|:.|||.:|
  Fly   472 TESAGHQEEI---------------DLSGWTTLTPQEIAMWIDSRARFVFPLSFLVFNLFFW 518

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	47/193 (24%)
		Cys-loop	185..199	CDD:349809	7/13 (54%)
		Neur_chan_memb	274..588	CDD:460753	73/342 (21%)
CG6927	NP_572194.1	LIC	3..520	CDD:455710	135/582 (23%)