DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and avr-15

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001024076.1 Gene:avr-15 / 179834 WormBaseID:WBGene00000233 Length:657 Species:Caenorhabditis elegans


Alignment Length:356 Identity:145/356 - (40%)
Similarity:205/356 - (57%) Gaps:49/356 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 YDKRVRPN------YGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAY----RKR 124
            ||.||||.      :|| ||.|.|.|.:.|||.:..|.|::::...||:.|.|.||::    ..:
 Worm   263 YDHRVRPPGEDGTIHGG-PVVVSVNMLLRSISKIDNVNMEYSVQLTFRESWVDKRLSFGVKGDAQ 326

  Fly   125 PGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNL 189
            |....|:.|.|    ||:||:||.||||:|.|:....|..||||..|:|..|:|:::..||||:|
 Worm   327 PDFLILTAGQE----IWMPDSFFQNEKQAYKHMIDKPNVLIRVHKDGTILYSVRISLVLSCPMHL 387

  Fly   190 QYFPMDRQLCHIEIESFGYTMRDIRYFWRD--------GLSSVGMSSEVELPQFRVLGHRQRATE 246
            ||:|||.|.|.|::.|:.||.:||.|.|::        ||||       .||.|::.........
 Worm   388 QYYPMDVQQCFIDLASYAYTTKDIEYVWKEETPVQLKAGLSS-------SLPSFQLTNTSTTYCT 445

  Fly   247 INLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMT 311
            ....||:||.|...||..|...|||:|:||||.::||:||||||::|.|.||||.|||||:||||
 Worm   446 SKTNTGSYSCLRTIIQLRRQFSYYLLQLYIPSCMLVIVSWVSFWIDRTAVPARVTLGVTTLLTMT 510

  Fly   312 TLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMAK--------RIQMRKQRFMAI 368
            |..|..||.||.::|:|:|||::|.|...:|.:|||:|.|.|:|.        |.:..|.....:
 Worm   511 TQSSGINAKLPPVAYIKAIDVWIGACMTFIFCALLEFAWVTYIANKQDANKRARTEREKAELPFL 575

  Fly   369 Q----------KIAEQKKQQLD-GANQQQAN 388
            |          ::|||:::.:. ..|::|.|
 Worm   576 QNSHNDVWVPREVAEQEREVMTVRMNRRQTN 606

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 74/194 (38%)
Cys-loop 185..199 CDD:349809 10/13 (77%)
Neur_chan_memb 274..588 CDD:460753 57/134 (43%)
avr-15NP_001024076.1 LIC 253..648 CDD:455710 145/356 (41%)

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