DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and LOC11175937

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:XP_061509725.1 Gene:LOC11175937 / 11175937 VectorBaseID:AGAMI1_001345 Length:236 Species:Anopheles gambiae


Alignment Length:165 Identity:53/165 - (32%)
Similarity:86/165 - (52%) Gaps:3/165 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    57 VNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAY 121
            :::|.||.:...:|||...|...|.|..|...:.||||.|::|..|.:..|.:..|.|.||||..
Mosquito    42 LSLSDILPTHQKTYDKNRAPKLLGQPTVVYFHVTVLSIDSINEESMTYVADIFLAQSWRDPRLRL 106

  Fly   122 RKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCP 186
            .:....|...:..:::.:||.||.||.|.|:..||..:..|.::.::|..::....:||:..||.
Mosquito   107 PENMSEEYRILDVDWLHSIWRPDCFFKNAKKVTFHEMSIPNHYLWLYHDKTLLYMSKLTLVLSCA 171

  Fly   187 MNLQYFPMDRQLCHIEIES--FG-YTMRDIRYFWR 218
            |..:.:|.|.|:|.:.|||  :| |..:..|..|:
Mosquito   172 MKFESYPHDTQICSMMIESCKYGQYQGKGCRVVWK 206

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 44/139 (32%)
Cys-loop 185..199 CDD:349809 5/13 (38%)
Neur_chan_memb 274..588 CDD:460753
LOC11175937XP_061509725.1 None
Blue background indicates that the domain is not in the aligned region.

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