DRSC/TRiP Functional Genomics Resources

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Protein Alignment TrpA1 and trpa-2

DIOPT Version :10

Sequence 1:NP_001261600.1 Gene:TrpA1 / 39015 FlyBaseID:FBgn0035934 Length:1232 Species:Drosophila melanogaster
Sequence 2:NP_492031.1 Gene:trpa-2 / 3565192 WormBaseID:WBGene00010873 Length:481 Species:Caenorhabditis elegans


Alignment Length:448 Identity:91/448 - (20%)
Similarity:168/448 - (37%) Gaps:140/448 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   708 KANCKKDSKSFYIKYSFAFLQCPFMFAKIDEKTGESITTASPIPLPALNTMVTHGRVELLAHPLS 772
            :.|..:||.:|...|              :..:||::....      |..:.:..:..::.||..
 Worm    34 RRNKAEDSTTFIFNY--------------ENGSGETLNWKE------LRKLKSGKKWGVIRHPYI 78

  Fly   773 QKYLQMKWNSYGKYF--HLANLLIYSIFLVF------------VTIYSSLMMNNIELKAGDNKTM 823
            ..|:..|......::  |:...|::.:.|.:            :||::.:....:.||.      
 Worm    79 LNYVNQKLIDCAFFYSLHILAFLVFFLLLAWHVFSRNLFKDFLITIFTGIFFMFLVLKG------ 137

  Fly   824 SQYCNMGWEQLTMNLSQNPSVASQIRLDSCEERINRTTAILFCAVVIVVYILLNSMRELIQIYQQ 888
                                        :.:.||.::.:..|  :|...:.:...|..|..::..
 Worm   138 ----------------------------TIKARITKSVSTWF--IVAFCFNIFTYMATLAYVWLP 172

  Fly   889 KL----HYILETVNLISWVLYISALVMVTPAFQPDGGINTIHYSAASIAVFLSWFRLLLFLQRFD 949
            .:    .|.||...:::|.|.|                         ||:..:|.. ||::.|..
 Worm   173 TVFGYDDYHLEVKKIVTWFLPI-------------------------IAIISAWAN-LLYIMRKS 211

  Fly   950 QVGIYVVMFLEILQTLIKVLMVFSILIIAFGLAFYILLS-------KIIDPQPNHLSFSNIPMSL 1007
            ..|||:.|...||::...:..::...:|||..||.:::.       .:||.|..:::.....:.:
 Worm   212 PFGIYIFMMTRILRSFAHIATIWIPTLIAFSFAFLLIMRDTGVKPWPLIDQQTENMTMVQTMLVI 276

  Fly  1008 L----RTFSMMLGELDFVGTYVNTYYRDQLKVPMTSFLILSVFMILMPILLMNLLIGLAVGDIES 1068
            |    :|.:||:||:|     .|........:|  |.|:| ||.|:..||||||::.|||||:..
 Worm   277 LQAVTKTSTMMIGEVD-----ANDILDTNQWIP--SILVL-VFEIITVILLMNLMVSLAVGDVTY 333

  Fly  1069 VRRNAQLKRL---------AMQVV---------LHTELERKLPHVWLQRVDKMELIEY 1108
            :...||.|.|         |:|:.         |||   :|.|:|.:...|...:.|:
 Worm   334 LNNTAQDKLLKIKVNFVIEALQISEQFQNEMFRLHT---KKTPNVLVINSDGTYISEF 388

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TrpA1NP_001261600.1 Ank_2 95..183 CDD:463710
ANK repeat 125..155 CDD:293786
ANKYR 140..461 CDD:440430
ANK repeat 157..199 CDD:293786
ANK repeat 259..298 CDD:293786
ANK repeat 300..330 CDD:293786
ANK repeat 336..369 CDD:293786
ANKYR 368..634 CDD:440430
ANK repeat 374..402 CDD:293786
ANK repeat 404..476 CDD:293786
ANK repeat 478..509 CDD:293786
TRPV 481..1093 CDD:454755 87/431 (20%)
ANK repeat 511..545 CDD:293786
ANK repeat 547..576 CDD:293786
ANK repeat 579..611 CDD:293786
ANK repeat 613..638 CDD:293786
trpa-2NP_492031.1 TRPV <190..326 CDD:454755 44/169 (26%)
Blue background indicates that the domain is not in the aligned region.

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