DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment smid and TRIP13

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_004228.1 Gene:TRIP13 / 9319 HGNCID:12307 Length:432 Species:Homo sapiens


Alignment Length:391 Identity:90/391 - (23%)
Similarity:149/391 - (38%) Gaps:91/391 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   576 DAAMDVDNVAP---EEPKKAVE-QEVDSSSSNDEYYEPTLAELTN-----FLDNPPEEFADPNF- 630
            :|..|:....|   |.|...|| .:..||::..|....::.:|.|     |.|....||.:|.. 
Human     3 EAVGDLKQALPCVAESPTVHVEVHQRGSSTAKKEDINLSVRKLLNRHNIVFGDYTWTEFDEPFLT 67

  Fly   631 ----CLTLIDFVDAIKVMQP-------------------------SAKREGFI-----TVPDT-- 659
                .:::||....:|..||                         ..:.|..|     .:|..  
Human    68 RNVQSVSIIDTELKVKDSQPIDLSACTVALHIFQLNEDGPSSENLEEETENIIAANHWVLPAAEF 132

  Fly   660 --TWDDIGALEKIREELKLAVLAPVKYPEMLERLGL-TAPSGVLLCGPPGCGKTLLAKAIANEAG 721
              .||.:....:::..|...|:..:.:.:......| |....|||.||||.|||.|.||:|.:..
Human   133 HGLWDSLVYDVEVKSHLLDYVMTTLLFSDKNVNSNLITWNRVVLLHGPPGTGKTSLCKALAQKLT 197

  Fly   722 I---------NFISVKGPELMNMYVGESERAVRACFQRARN-----SAPCVIFFDEFDSLCPKRS 772
            |         ..|.:....|.:.:..||.:.|...||:.::     .|...:..||.:||...|:
Human   198 IRLSSRYRYGQLIEINSHSLFSKWFSESGKLVTKMFQKIQDLIDDKDALVFVLIDEVESLTAARN 262

  Fly   773 --DGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQ- 834
              ..|...:...|:||.:||::|.::....|.||..:|..:.||.|.:  .|.|...|:|.|.. 
Human   263 ACRAGTEPSDAIRVVNAVLTQIDQIKRHSNVVILTTSNITEKIDVAFV--DRADIKQYIGPPSAA 325

  Fly   835 -------SERTEILKATTKNGKRPVLA-----------DDVD-----LDEIAAQTEGYTGADLAG 876
                   |...|::|......::.:|.           ::|.     |::|:.::||.:|..|..
Human   326 AIFKIYLSCLEELMKCQIIYPRQQLLTLRELEMIGFIENNVSKLSLLLNDISRKSEGLSGRVLRK 390

  Fly   877 L 877
            |
Human   391 L 391

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 90/391 (23%)
TRIP13NP_004228.1 McrB 34..>205 CDD:441011 37/170 (22%)
RecA-like_Pch2-like 121..319 CDD:410916 51/199 (26%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.