Protein Alignment smid and AT3G27120

DIOPT Version :10

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_001319654.1
• Gene: AT3G27120 / 822331
• AraportID: AT3G27120
• Length: 680
• Species: Arabidopsis thaliana
• Alignment Length: 740
• Identity: 190/740 - (25%)
• Similarity: 306/740 - (41%)
• Gaps: 146/740 - (19%)

  Fly   263 LCEMLIHIKSPEFYF------QLGLLPSRGLLLHGPPGCGKTFLARAISGQLKMPLMEIPATELI 321
            :|..::.....||.|      .||....|             .:|...|.....||:..|...|.
plant     1 MCGSVVSDSEREFEFHFWGFGHLGKEEER-------------IMAGKRSSPFSSPLLRPPPEFLN 52

  Fly   322 GGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSLDNLKANEF 386
            ....||:|             :||  :..|:|           :..:|:.|.|..:...|:.::|
plant    53 VKEEGETE-------------TPC--WRKEVD-----------ENLKRLQSLLFGADKFLEKSDF 91

  Fly   387 GQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHI------PSRKERREILRIQCEGLSVDPKLNY 445
            ..:.::            |||.:|..|.......      |.|:|....:.:..|||..|.....
plant    92 SSAQIL------------GLRLLGFLDSRSVTDADRDFIGPIRREVASKIDLALEGLVSDSDRKA 144

  Fly   446 DKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPSEDAGETPV 510
            .::|...||       |:........|::....|:...| .|:.|...|...::....|......
plant   145 FELANTAPG-------AIFGSKGGFDVEKIKQSKYFGFH-VSQSNGKGVKEMEERHDTDKLIPKA 201

  Fly   511 PDS--KGEETAKDAEAEQKVDGDKETSAK------------DKSEG-----DSPNIETPKKATNG 556
            |.|  :.:.|:....:..|.|..::||..            ::|.|     ..|:.||...|.:|
plant   202 PKSMMQAKLTSLYGNSIGKPDNQRKTSVNNQDRASDECVIVERSHGFGFGTKRPHAETSSLANDG 266

  Fly   557 ------------NSSIKSPQKTPKK--SAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSS----- 602
                        ::.||......:|  |.|.|:..      ::|:..|.|:.:...|.|.
plant   267 EVKEDGAPNGFVSAKIKLEMDVRQKRGSTESPSSC------LSPQSDKNALGRGYGSRSGGLRRG 325

  Fly   603 -NDEYYEP------TLAELTNFLDNPPEEFADPN--FCLTLI-----DFVDAIKVMQP----SAK 649
             ...:..|      .:..||:.:....::..|.:  .||.::     :..:.::.::|    ...
plant   326 YRSNFVPPVKTNGNNVGNLTSRIGGKTDDALDDSTRTCLEMLCGPDGELPEKLRNLEPRLIEHVS 390

  Fly   650 REGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTAP-SGVLLCGPPGCGKTLLA 713
            .|.....|:..||||..||..::.:...|:.|:..|::.:  |..:| .|:||.||||.|||::.
plant   391 NEIMDRDPNVRWDDIAGLEHAKKCVTEMVIWPLLRPDIFK--GCRSPGKGLLLFGPPGTGKTMIG 453

  Fly   714 KAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGN 778
            ||||.||...|..:....|.:.::||.|:.|||.|..|....|.|||.||.|||..:|...|: :
plant   454 KAIAGEAKATFFYISASSLTSKWIGEGEKLVRALFGVASCRQPAVIFVDEIDSLLSQRKSDGE-H 517

  Fly   779 NSGTRIVNQLLTEMDGVEE-RKGVYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILK 842
            .|..|:..|.|.||:|.:. .:.:.::.|||||..:|.|..|  ||...||:..|....|..|::
plant   518 ESSRRLKTQFLIEMEGFDSGSEQILLIGATNRPQELDEAARR--RLTKRLYIPLPSSEARAWIIQ 580

  Fly   843 ATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNG--DTNL--DDL-CV 902
            ...|......|:|| |::.|...||||:|:|:..|||.|:|..||::|..|  .|||  ||: .|
plant   581 NLLKKDGLFTLSDD-DMNIICNLTEGYSGSDMKNLVKDATMGPLREALKRGIDITNLTKDDMRLV 644

  Fly   903 RSQHFQEALQQLRPSVNEQDRKIYD 927
            ..|.|::|||::||||::.:..||:
plant   645 TLQDFKDALQEVRPSVSQNELGIYE 669

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:465247
		CDC48	<242..933	CDD:273521	190/740 (26%)
AT3G27120	NP_001319654.1	P-loop containing Nucleoside Triphosphate Hydrolases	382..567	CDD:476819	69/189 (37%)
		AAA_lid_3	593..>628	CDD:465537	17/35 (49%)
		Vps4_C	<644..676	CDD:462762	12/26 (46%)