Protein Alignment smid and CDC48B

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: NP_178463.1
• Gene: CDC48B / 814895
• AraportID: AT2G03670
• Length: 603
• Species: Arabidopsis thaliana
• Alignment Length: 692
• Identity: 225/692 - (32%)
• Similarity: 329/692 - (47%)
• Gaps: 181/692 - (26%)

  Fly   252 DIGGMDSTLKELCEMLIHIKSPEFYFQ-------LGLLPSRGLLLHGPPGCGKTFLARAISGQLK 309
            :|||.:..|:.|.|::|      |.|:       |||...|||||:||||.|||.|.||:..:..
plant    23 EIGGNERALQALRELII------FPFRYPLEARTLGLKWPRGLLLYGPPGTGKTSLVRAVVQECD 81

  Fly   310 MPLMEIPATELIGGISGESEERIREVFDQAIGYS----PCVLFIDEIDAIGGNRQWASKDMERRI 370
            ..|:.:....:....:||||:.:||.|.:|..::    |.|:||||||.:...|. |.::.:.||
plant    82 AHLIVLSPHSVHRAHAGESEKVLREAFAEASSHAVSDKPSVIFIDEIDVLCPRRD-ARREQDVRI 145

  Fly   371 VSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILRIQCE 435
            .|||.:.:|:.|.:.....|||:|:|.|.|.:||.|||.||||..:.:..|:.::|.:||::..:
plant   146 ASQLFTLMDSNKPSSSAPRVVVVASTNRVDAIDPALRRAGRFDALVEVSTPNEEDRLKILQLYTK 210

  Fly   436 GLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDE 500
            .:::||.::...||....|||||||.|| .|.|:::..:||
plant   211 KVNLDPSVDLQAIAISCNGYVGADLEAL-CREATISASKRS------------------------ 250

  Fly   501 PSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSPQK 565
                                                     .||
plant   251 -----------------------------------------SDS--------------------- 253

  Fly   566 TPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADPNF 630
                                                                            .
plant   254 ----------------------------------------------------------------L 254

  Fly   631 CLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGLTA 695
            .||..||..|..|:.||..|...:.:|..||||:|.|:.::::|:.||..|:|:.....::|::.
plant   255 ILTSQDFKIAKSVVGPSINRGITVEIPKVTWDDVGGLKDLKKKLQQAVEWPIKHSAAFVKMGISP 319

  Fly   696 PSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIF 760
            ..|:||.|||||.||.||||.||.|..:|.|:...||.:|||||.|..:|..|||||.::|.:||
plant   320 MRGILLHGPPGCSKTTLAKAAANAAQASFFSLSCAELFSMYVGEGEALLRNTFQRARLASPSIIF 384

  Fly   761 FDEFDSLCPKRSDGGDGNNS--GTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAILRPGRL 823
            |||.|.:..||.|....|:|  |.|:::.|||||||:||.||:.:|||||||..||.|::||||.
plant   385 FDEADVVACKRGDESSSNSSTVGERLLSTLLTEMDGLEEAKGILVLAATNRPYAIDAALMRPGRF 449

  Fly   824 DTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQ 888
            |.:|||..|:...|.|||:..|:|   ..|.|||||.:||.:|:.:|||:|.||.:::...|||:
plant   450 DLVLYVPPPDLEARFEILQVHTRN---MTLGDDVDLRKIAEETDLFTGAELEGLCRESGTVSLRE 511

  Fly   889 SLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDKLR 930
                   |:....|.::|||.|...|:|::..::.:.|...|
plant   512 -------NIAATAVFNRHFQTAKSSLKPALTIEEVETYSSFR 546

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330
		SpoVK	271..919	CDD:223540	216/660 (33%)
		AAA	287..418	CDD:278434	55/134 (41%)
		P-loop_NTPase	679..>716	CDD:304359	16/36 (44%)
		AAA	699..830	CDD:278434	74/132 (56%)
CDC48B	NP_178463.1	CDC48	<23..551	CDD:273521	225/692 (33%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D194195at2759
OrthoFinder	1	1.000	-	-		FOG0000137
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	4	3.820