DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Atad1

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001030174.1 Gene:Atad1 / 309532 RGDID:1308570 Length:361 Species:Rattus norvegicus


Alignment Length:267 Identity:94/267 - (35%)
Similarity:146/267 - (54%) Gaps:18/267 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly   660 TWDDIGALEKIREELKLAVLAPVKYPEMLE--RLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGI 722
            ||.||..|:.:..:||..|:.|:|...:.|  || |..|.||||.|||||||||:|||.|.|||.
  Rat    89 TWSDIAGLDDVITDLKDTVILPIKKKHLFENSRL-LQPPKGVLLYGPPGCGKTLIAKATAKEAGC 152

  Fly   723 NFISVKGPELMNMYVGESERAVRACFQRARNSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVN- 786
            .||:::...|.:.:.|||::...|.|..|....|.:||.||.||....||   ..::..|.::. 
  Rat   153 RFINLQPSTLTDKWYGESQKLAAAVFSLAIKLQPSIIFIDEIDSFLRNRS---SSDHEATAMMKA 214

  Fly   787 QLLTEMDGVEERKG--VYILAATNRPDIIDPAILRPGRLDTILYVGFPEQSERTEILKATTKNGK 849
            |.::..||::....  |.::.|||||..:|.||:|  |:.|..::..|...:|..|||...||..
  Rat   215 QFMSLWDGLDTDHSCQVIVMGATNRPQDLDSAIMR--RMPTRFHINQPALKQREAILKLILKNEN 277

  Fly   850 RPVLADDVDLDEIAAQTEGYTGADLAGLVKQASMFSLRQSLNNGDTNLDD----LCVRSQHFQEA 910
               :...|||.|:|.:|:|::|:||..:.:.|::..:|:.:|:......|    ..|:.|....|
  Rat   278 ---VDRHVDLLEVAQETDGFSGSDLKEMCRDAALLCVREYVNSTSEESHDEDEIRPVQQQDLHRA 339

  Fly   911 LQQLRPS 917
            :::::.|
  Rat   340 IEKMKKS 346

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 94/267 (35%)
Atad1NP_001030174.1 SpoVK 4..344 CDD:440232 93/263 (35%)
RecA-like_ATAD1 92..257 CDD:410928 67/170 (39%)
Blue background indicates that the domain is not in the aligned region.

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