DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and Fignl1

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:NP_001011913.1 Gene:Fignl1 / 289777 RGDID:1307112 Length:677 Species:Rattus norvegicus


Alignment Length:633 Identity:163/633 - (25%)
Similarity:257/633 - (40%) Gaps:128/633 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly   312 LMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLIS 376
            :.|:|..    |:.|.|||        |...|..|...::..||.||                  
  Rat   146 IFEVPQL----GVCGGSEE--------ADLLSSSVHGTEKTQAIPGN------------------ 180

  Fly   377 SLDNLKANEFGQSVVVIAATTRPDVLD---PGLRRIGRFDHEIAIHIPSRKERREILRIQCEGLS 438
               :|:.:.|..::..:|..|:..:..   .|......| |...:...::||.:..         
  Rat   181 ---SLRCSPFQSTLFPMATNTKTCLTSSAPSGESTTATF-HRTPLFGNTKKEPQSF--------- 232

  Fly   439 VDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMTTVTLDDDEPS- 502
              ||             ....|...:|..:.|.....:.::.:..:.:...||.:....:..|| 
  Rat   233 --PK-------------TSTGLNMFLSNPSCVPSGCENPRERKAFNDSDTINMLSNPTLNKAPSK 282

  Fly   503 -EDAG---ETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGNSSIKSP 563
             ||:|   :..:|..|   |||    ||.....|:.|.:.:....|.|....|....|.|.....
  Rat   283 TEDSGQREDNSLPTFK---TAK----EQLWADQKKRSHQSQHTSKSFNGAIKKSLGAGRSRGIFG 340

  Fly   564 QKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPPEEFADP 628
            :..|..|.::  |.:....||.|:..:....:....:....:..||.:.||.      ..|..|.
  Rat   341 KFVPPVSNKQ--DGSEQNGNVKPKSSRAGSAEPAHLTDDRLKNVEPRMVELI------MNEIMDH 397

  Fly   629 NFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEMLERLGL 693
            .                           |...|:||..:|..:..:|..|:.|:..|::.  .||
  Rat   398 G---------------------------PPVHWEDIAGVEFAKATIKEIVVWPMMRPDIF--TGL 433

  Fly   694 TA-PSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRARNSAPC 757
            .. |.|:||.||||.||||:.|.||:::|..|.|:....|.:.:|||.|:.|||.|..||...|.
  Rat   434 RGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPA 498

  Fly   758 VIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGV----EERKGVYILAATNRPDIIDPAIL 818
            |||.||.|||..:|.||  .:.|..||..:.|.::||.    |:|  :.::.|||||..||.|..
  Rat   499 VIFIDEIDSLLSQRGDG--EHESSRRIKTEFLVQLDGATTSSEDR--ILVVGATNRPQEIDEAAR 559

  Fly   819 RPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQASM 883
            |  ||...||:..||.|.|.:|:  .....|......|.:.:.:..|::|::|||:..|.::||:
  Rat   560 R--RLVKRLYIPLPEASARKQIV--VNLMSKEQCCLTDEETELVVQQSDGFSGADMTQLCREASL 620

  Fly   884 FSLRQSLNNGD--TNLDDLC--VRSQHFQEALQQLRPSVNEQDRKIYD 927
            ..:| ||:..|  |...|..  :....|:.|.:.:||||:.:|.::|:
  Rat   621 GPIR-SLHTADIATISPDQVRPIAYIDFENAFRTVRPSVSPKDLELYE 667

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 163/633 (26%)
Fignl1NP_001011913.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 203..232 5/29 (17%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 249..324 18/81 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 337..378 6/42 (14%)
RecA-like_Figl-1 383..568 CDD:410933 78/225 (35%)
AAA_lid_3 593..>624 CDD:465537 9/30 (30%)
Vps4_C <634..674 CDD:462762 9/34 (26%)
Blue background indicates that the domain is not in the aligned region.

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