Protein Alignment smid and rfx6

DIOPT Version :9

• Sequence 1: NP_523959.2
• Gene: smid / 38824
• FlyBaseID: FBgn0016983
• Length: 944
• Species: Drosophila melanogaster
• Sequence 2: XP_002938344.3
• Gene: rfx6 / 100487566
• XenbaseID: XB-GENE-1013164
• Length: 931
• Species: Xenopus tropicalis
• Alignment Length: 448
• Identity: 83/448 - (18%)
• Similarity: 150/448 - (33%)
• Gaps: 136/448 - (30%)

  Fly    11 HLITIRVKKYLEEHIGETYL--DVKQMTRELMQKYPEYSRRKFGPFRQLVHQAF-SIISESYNLD 72
            |||.:.:.:|:...: ||..  |.:|..:.|:.||.:.:......|.......| :..::|.||.
 Frog   528 HLIRMLLDEYILLAV-ETQFNNDKEQELQNLLDKYMKNADASKATFTASPSSCFLASRNKSGNLS 591

  Fly    73 KVSSSEEDCVSEDSEPPPTNSVMNNMMNSLYSQPRKPLAPKPISEPIDISSGDENEDDSNTKTTN 137
            ..||.:.:|:.:.:....::...:.:::.:::..........:::|:|||     :...:..|
 Frog   592 TDSSVKNECLQKQTFTTLSSEQHSGLVSGMHAFANGDNENIQLTDPVDIS-----QSTGHLMT-- 649

  Fly   138 GDGVAAAAAPPPPTPAV--QGSALKRLMEEVPEIAVAAKKVAK--PNTIHVSS-SEAIQKLHQ-- 195
                      ||.:||:  :||.:.:     ..:|:....|..  |:..|||| |:...:.|.
 Frog   650 ----------PPMSPAMLNRGSVINQ-----GPMAIRPSSVGPVLPSHAHVSSFSDTPYENHPSS 699

  Fly   196 -----VVGNRAKNLSEDAVPRSKDHRNV-PGLYQQLHQNQ-SRDRLRKFKRDLEVQ----HPTES 249
                 ..|:..:.:.....|.....|.| ...|..:::.| |||   .|.....|.    ||:.:
 Frog   700 NQNYFATGSNYQAMFHAQPPNGVFIRRVDQSRYTPINEQQISRD---YFTSSCAVSPYSGHPSSN 761

  Fly   250 FRDIGGMDSTLKELCEMLIHIKSPEFYFQLGLLPSRGL-LLHGPPGCGKTFLARAISGQLKMPLM 313
            :.     .||            ||:....:..:.:||. .|....||..
 Frog   762 YG-----PST------------SPQEIHSMQFINTRGFNFLGSSGGCQN---------------- 793

  Fly   314 EIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDMERRIVSQLISSL 378
                    |..|..|..          ||            .|.|..:........::.|.:
 Frog   794 --------GNYSSNSSN----------GY------------YGNNLSYPESHRLGSMIDQHV--- 825

  Fly   379 DNLKANEFGQSVVVIAATTRP-----DVLDP-------GLRRIGRFDHEIAIHIPSRK 424
                      ||:...::.||     |:.||       |.:::|.|..|....|..||
 Frog   826 ----------SVISSVSSIRPLHSFNDIHDPLNILDDSGRKQLGSFYAETPSPIICRK 873

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
smid	NP_523959.2	Nucleolin_bd	2..71	CDD:293330	14/62 (23%)
		SpoVK	271..919	CDD:223540	29/167 (17%)
		AAA	287..418	CDD:278434	22/143 (15%)
		P-loop_NTPase	679..>716	CDD:304359
		AAA	699..830	CDD:278434
rfx6	XP_002938344.3	RFX_DNA_binding	135..208	CDD:367002

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0464
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.900