DRSC/TRiP Functional Genomics Resources

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Protein Alignment smid and afg2a

DIOPT Version :10

Sequence 1:NP_523959.2 Gene:smid / 38824 FlyBaseID:FBgn0016983 Length:944 Species:Drosophila melanogaster
Sequence 2:XP_073778511.1 Gene:afg2a / 100332622 ZFINID:ZDB-GENE-111026-1 Length:819 Species:Danio rerio


Alignment Length:696 Identity:220/696 - (31%)
Similarity:343/696 - (49%) Gaps:159/696 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   239 RDLEVQHPTESFRDIGGMDSTLKELCEML-IHIKSPEFYFQLGLLPSRGLLLHGPPGCGKTFLAR 302
            ||.:.|....::..|||:...|:.:.|.: :.:|.||.:...|:.|.||:||:||||.|||.:.|
Zfish   264 RDEQDQGSKVTYSMIGGLRGQLEVIRETIELPLKHPELFKSYGIPPPRGVLLYGPPGTGKTLIGR 328

  Fly   303 AISGQLKMPLMEIPATELIGGISGESEERIREVFDQAIGYSPCVLFIDEIDAIGGNRQWASKDME 367
            |::.::...:..|...|::....||:|.|:|::|.:|....|.::||||:||:...|:.|..::|
Zfish   329 AVANEVGAHMSVINGPEIMSKFYGETEARLRQIFTEAAQRQPSIIFIDELDALCPKREGAQNEVE 393

  Fly   368 RRIVSQLISSLDNLKANEFGQSVVVIAATTRPDVLDPGLRRIGRFDHEIAIHIPSRKERREILR- 431
            :|:|:.|::.:|.:.:......::|:.||.||..|||.|||.||||.|:.|.:|:...||:||: 
Zfish   394 KRVVATLLTLMDGIGSEGHSGQLLVLGATNRPHALDPALRRPGRFDKELEIGVPNVDGRRDILQT 458

  Fly   432 ----IQCEGLSVDPKLNYDKIAELTPGYVGADLMALVSRAASVAVKRRSMKKFRELHAASEKNMT 492
                :.|:....:    ..::|:...|||||||.|:...|.              |||.      
Zfish   459 LLRSVPCDATHEE----LQELADAAHGYVGADLAAVCKEAG--------------LHAL------ 499

  Fly   493 TVTLDDDEPSEDAGETPVPDSKGEETAKDAEAEQKVDGDKETSAKDKSEGDSPNIETPKKATNGN 557
                                                                      ::.....
Zfish   500 ----------------------------------------------------------RRVLGSR 506

  Fly   558 SSIKSPQKTPKKSAEKPTDAAMDVDNVAPEEPKKAVEQEVDSSSSNDEYYEPTLAELTNFLDNPP 622
            |::...|             .||...|...:.:.|:.:                           
Zfish   507 SALSDVQ-------------VMDKVKVMTSDLRLAMTE--------------------------- 531

  Fly   623 EEFADPNFCLTLIDFVDAIKVMQPSAKREGFITVPDTTWDDIGALEKIREELKLAVLAPVKYPEM 687
                                 ::|||.||..|.||...|.|||.||::::.||.||..|:::||:
Zfish   532 ---------------------VKPSAMREVAIDVPKVKWSDIGGLEQVKQALKQAVEWPLRHPEV 575

  Fly   688 LERLGLTAPSGVLLCGPPGCGKTLLAKAIANEAGINFISVKGPELMNMYVGESERAVRACFQRAR 752
            ..|||:|.|.||||.|||||.||::|||:|||:.:||:|:|||||::.||||||||||..|::||
Zfish   576 FTRLGITPPKGVLLYGPPGCSKTMIAKALANESQLNFLSIKGPELLSKYVGESERAVREVFRKAR 640

  Fly   753 NSAPCVIFFDEFDSLCPKRSDGGDGNNSGTRIVNQLLTEMDGVEERKGVYILAATNRPDIIDPAI 817
            ..||.::||||.|:|...|...........|::.||||||||||:.|.|.:||||||||:||.|:
Zfish   641 TVAPSIVFFDEIDALAVARGRSAQAGGVADRVLAQLLTEMDGVEQLKDVTVLAATNRPDMIDKAL 705

  Fly   818 LRPGRLDTILYVGFPEQSERTEILKATTKNGKRPVLADDVDLDEIAAQTEGYTGADLAGLVKQAS 882
            :||||||.|::|..|:...|..|.   |...::..:...|.|:|:..:||.|:||::..:.::|:
Zfish   706 MRPGRLDRIIFVPLPDADTRRAIF---TLQFRQMPIHPSVHLEELVTRTERYSGAEVTAVCREAA 767

  Fly   883 MFSLRQSLNNGDTNLDDLCVRSQHFQEALQQLRPSVNEQDRKIYDK 928
            :.:|::|::...       |:..|||.||..:.|.:.|...:.|.:
Zfish   768 LQALQESISAEQ-------VKDTHFQSALNIITPRIPESLLQTYSR 806

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
smidNP_523959.2 Nucleolin_bd 2..71 CDD:465247
CDC48 <242..933 CDD:273521 218/693 (31%)
afg2aXP_073778511.1 None
Blue background indicates that the domain is not in the aligned region.

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