DRSC/TRiP Functional Genomics Resources

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Protein Alignment: MED4 and AT5G02850

Sequence 1:NP_648094.1 Gene:MED4 FlyBaseID:FBgn0035754 Length:258 Species:Drosophila melanogaster
Sequence 2:NP_195905.1 Gene:AT5G02850 AraportID:AT5G02850 Length:426 Species:Arabidopsis thaliana

Alignment Length:326 Identity:70/327 (21%)
Similarity:107/327 (33%) Gaps:122/327 (37%)


  Fly     6 STKERLLLLIDDIEMIAKELIEQAHQKISSTELVDLLDLLVAKDEEFRK-------MLELAEEQA 63
            ||||    ::.....:..:|.|      :.|||.::|||..||.:..|:       :|..|.:..
plant   140 STKE----ILSQFNSLQTQLFE------AVTELQEILDLQDAKQKVAREIKSKDSSLLAFANKLK 194

  Fly    64 KVEEAMDQL-----------RAKVEVHDREIQKLQKSLKDAELILSTAIFQARQKLASINQANKR 117
            ..|..:|.|           |:|:|..|.:        .|.|...|:....::.||         
plant   195 DAERVLDMLVDDYSDYRKPKRSKIEEDDED--------NDNESSSSSTTVSSQLKL--------- 242

  Fly   118 PVSSEELIKYAHRIS-------SANAVSAPLTWCIGDLRRPYPTDIEMRNGL----------LGK 165
                ::::.|||:||       ...|..|||...:    .|.|.|.:||...          |.|
plant   243 ----KDILAYAHKISYTTFAPPEFGAGQAPLRGAL----PPAPQDEQMRASQLYTFADLDIGLPK 299

  Fly   166 SEQNI----------------------------NGGTVTHQNSGMPSEQQRTLSGSAGSGSGSGA 202
            :.:|:                            |....:....|||.|..|.|....   .|...
plant   300 TVENMEKKVEALIEPPPPPEAMDISAIHNLLPPNIAVPSGWKPGMPVELPRDLPLPP---PGWKP 361

  Fly   203 GGEV----------PNAFQNQFNWNLGELHM--TMGASGNTVALETRAQDDVEVMSTDSSSSSSS 255
            |..|          |.|..:|        ||  :.|.......::.||. .::::..|.||..||
plant   362 GDPVVLPPLESIAAPRAEDHQ--------HMRPSQGLHRPPDVIQVRAV-QLDILEDDDSSDYSS 417

  Fly   256 D 256
            |
plant   418 D 418

Known Domains:


GeneSequenceDomainRegion External IDIdentity
MED4NP_648094.1 Med4 47..189 CDD:287038 40/205 (20%)
AT5G02850NP_195905.1 Med4 143..320 CDD:287038 43/212 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 LDO PTHR13208
Phylome 00.000 Not matched by this tool.
11.100

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