DRSC/TRiP Functional Genomics Resources

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Protein Alignment Dscam2 and Dscam

DIOPT Version :9

Sequence 1:NP_001261500.1 Gene:Dscam2 / 38788 FlyBaseID:FBgn0265296 Length:2101 Species:Drosophila melanogaster
Sequence 2:XP_038943864.1 Gene:Dscam / 171119 RGDID:619992 Length:2034 Species:Rattus norvegicus


Alignment Length:2161 Identity:663/2161 - (30%)
Similarity:1032/2161 - (47%) Gaps:227/2161 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MWISSRFFVILLLLNLDNTCSEPFEAHLRGPGFVMEPPGRVEFSNSSGGWLDCSASGSPQPTVDW 65
            |||    ..:.|..:..|..||...:.|.   ||......|.|:::||..:.|.|:|.|..|:.|
  Rat     1 MWI----LALSLFQSFANVFSEEPHSSLY---FVNASLQEVVFASTSGTLVPCPAAGIPPVTLRW 58

  Fly    66 VHADGSAVTEIHGVRRVLRNGTLVLMPFAAAAYHQDVHNTIYRCIASNSVGRIVSRDVQVRAVVA 130
            ..|.|..:.::.|:|.|..||||.:.||..:::...:|:..|.|.|.|..|:|.|:||.::||:.
  Rat    59 YLATGEEIYDVPGIRHVHPNGTLQIFPFPPSSFSTLIHDNTYYCTAENPSGKIRSQDVHIKAVLR 123

  Fly   131 QAYKVDVEVLSAARGCTAILRCVVPTFVKELVRVVSWVHEPAIYIYPSLQGDGKFHLLPTGELLI 195
            :.|.|.||.....||..|:.:|::|:.|:..|.||||..:..     ||....:|.:..||.|.|
  Rat   124 EPYTVRVEDQKTMRGNVAVFKCIIPSSVEAYVTVVSWEKDTV-----SLVSGSRFLITSTGALYI 183

  Fly   196 HNLQESDESQSFRCRSMHRLTRQVVVSSPTRLRI----NSHRGIISPSVVEHTAHVQVSQDEGAV 256
            .::|..|...::||.:.||.|.:...|:..||.:    ||     :||:::...|.:....:...
  Rat   184 KDVQNEDGLYNYRCITRHRYTGETRQSNSARLFVSDPANS-----APSILDGFDHRKAMAGQRVE 243

  Fly   257 LLCVAQGCPSPEYSWFTHNGAGPLPV-LSGPRVRLLGPILAIEAVTGEDSGVYKCTAGNVGGEAS 320
            |.|.|.|.|.|:|.|...|    :|: ||| |.:.....|.||.....|||.|.|...|..|.|.
  Rat   244 LPCKALGHPEPDYRWLKDN----MPLELSG-RFQKTVTGLLIENSRPSDSGSYVCEVSNRYGTAK 303

  Fly   321 AELRLTVATPIQVEISPNVLSVHMGGTAEFRCLVTSNGSPVGMQNILWYKDGRQLPSSGRVEDT- 384
            ...||.|..|::..|||..:...:|......|.||.|..    |.:.||::|..|.....|..| 
  Rat   304 VIGRLYVKQPLKATISPRKVKSSVGSQVSLSCSVTGNED----QELSWYRNGEILNPGKNVRITG 364

  Fly   385 -----LVVPRVSRENRGMYQCVVRRPEGDTFQATAELQ--LGDAPPVLLYSFIEQTLQPGPAVSL 442
                 |::..:.:.:.|.|||.||:   |...|...:|  |.|..|.::.:|.|:.:.|...|||
  Rat   365 LNHANLIMDHMVKSDGGAYQCFVRK---DKLSAQDYVQVVLEDGTPKIISAFSEKVVSPAEPVSL 426

  Fly   443 KCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDVISHVNISHVMVEDGGEYACIAENRAG 507
            .|:..|.|.|.::||||..|:.......|.|.||..|:|:|::|||...|.|||.|.|.|.|.||
  Rat   427 VCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGNVVSYLNISSSQVRDGGVYRCTANNSAG 491

  Fly   508 RVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKCPVAGYPIEEIHWERGGRELPDDIRQ-RVQPD 571
            .|.:.||:|:.|...||.:..:||::|....:.|.|.|||...|.|.:....||.:.|| ..:.:
  Rat   492 VVLYQARINVRGPASIRPMKNITAIAGRDTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENN 556

  Fly   572 GSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVIVPPKLSPFQTNILQLNMGDRASLTCSV 636
            |:|.:|.|||..|.|.|||....:...|..:|..|||.|||.:.||:  ..:.::|.|..:.|.|
  Rat   557 GTLKLSDVQKEVDEGEYTCNVLVQPQLSTSQSVHVTVKVPPFIQPFE--FPRFSIGQRVFIPCVV 619

  Fly   637 VKGDLPLTINWRKDGRPIDPTQHMSVKQVDQYNSILVIENLGSDHTGNYSCVVRNSAAEVENSQA 701
            |.||||:||.|:||||||..:..:::..:| :.|.|.|.||...|.|||:|:.||.||.||:...
  Rat   620 VSGDLPITITWQKDGRPIPASLGVTIDNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQSQ 683

  Fly   702 LLVNVPPRWIVEPVDANVERNRHIMLHCQAQGVPTPSIVWKKATGSKSGEYEEVRERPFTKLLGN 766
            |:|.|||:::|:|.|.:....:.::|:|.|:|.|.|:||||.:.|:...:::.:......::|.|
  Rat   684 LIVRVPPKFVVQPRDQDGIYGKAVILNCSAEGYPVPTIVWKFSKGAGVPQFQPIALNGRIQVLSN 748

  Fly   767 GSLLLQHVKEDREGFYLCQANNGIGTGIGKVIQLKVNSSPYFSSTSRSVMVKKGDTALLQCAVSG 831
            ||||::||.|:..|:|||:.:|.:|..:.|.:.|.|......:|...:.:..:|....:.|...|
  Rat   749 GSLLIKHVVEEDSGYYLCKVSNDVGADVSKSMYLTVKIPAMITSYPNTTLATQGQRKEMSCTAHG 813

  Fly   832 DKPINIVWMRSGKNTLNPS-TNYKISVKQEATPDGVSAELQIRTVDATDSGPYFCRASNLYGNDQ 895
            :|||.:.|.:..: .:||. ..|.:|.|:  ..:.|.:.|||......|||.:.|.|.|.||.|:
  Rat   814 EKPIIVRWEKEDR-IINPEMARYLVSTKE--VGEEVISTLQILPTVREDSGFFSCHAINSYGEDR 875

  Fly   896 QLVQLQVQEPPLPPSVLEAAMISSRSVNIKWQPKTLGTGDVTKYIVEFREADHSLPPALFVDQWQ 960
            .::||.|||||.||.: |...:.:|::.::|.....|...:|.|.:|.:...         |.|.
  Rat   876 GIIQLTVQEPPDPPEI-EIKDVKARTITLRWTMGFDGNSPITGYDIECKNKS---------DSWD 930

  Fly   961 QIE-VKD-PPHFN-AMIENLKPATRYAFRVIAEGSAGRSAPSQELIVRTEPQRPAGPPLSLSARP 1022
            ..: .|| .|..| |.|.::.|::.|:.|:.|:...|:|.||.|:.:..:...|.|||..:...|
  Rat   931 SAQRTKDVSPQLNSATIIDIHPSSTYSIRMYAKNRIGKSEPSNEITITADEAAPDGPPQEVHLEP 995

  Fly  1023 LSSTELLISWVAPLPELRHGDIQGYNVGYK-LSSSGNTAYNFTSVSGDGDGGNGELLLSGLAKFA 1086
            .||..:.::|.||...|::|.|:||.:||: .|:.||..:|..|:...||  :....|..|.||.
  Rat   996 TSSQSIRVTWKAPKKHLQNGIIRGYQIGYREYSTGGNFQFNIISIDTTGD--SEVYTLDNLNKFT 1058

  Fly  1087 RYTVVVQAFNQVGPGPLSEPTAAQTMEDVPSRPPEDVRCAALSSQSLQVSWQPPPIYHTNGLLQG 1151
            :|.:||||.|:.|.||.|:.....|:|||||.|||:|:..|.|.:|:.:||........||:|||
  Rat  1059 QYGLVVQACNRAGTGPSSQEIITTTLEDVPSYPPENVQAIATSPESISISWSTLSKEALNGILQG 1123

  Fly  1152 YKLIF-EPIIDDIQPSKDEVESRKTTALTMVLTGLRKYTNYSIQVLAHTRMGDGVVSKPLFCHSE 1215
            :::|: ..:||.   ...|:::..||..::.|.||.|||||||||||.||.||||.|:.:|..::
  Rat  1124 FRVIYWANLIDG---ELGEIKNVTTTQPSLELDGLEKYTNYSIQVLAFTRAGDGVRSEQIFTRTK 1185

  Fly  1216 EDVPEAPADIKVVSSSSQSLYISWLPPNEPNGVITKYSL-----YTRVVNGREELNNEKRSLPSQ 1275
            ||||..||.:|..::|:..:::|||||.:.||:|.||::     |..|:       :|..:.|..
  Rat  1186 EDVPGPPAGVKAAAASASMVFVSWLPPLKLNGIIRKYTVFCSHPYPTVI-------SEFEASPDS 1243

  Fly  1276 QAYYEAKGLHPHMEYQFWVTASTRVGEGKSSRVSSQITTNRIPARIISFGGPVVRPWRSTVTLPC 1340
            .: |....|..:.:|..||.|.|..|.|.||.:.:.....:.||||::|.|.|..||...:.|||
  Rat  1244 FS-YRIPNLSRNRQYSVWVVAVTSAGRGNSSEIITVEPLAKAPARILTFSGTVTTPWMKDIVLPC 1307

  Fly  1341 TAVGKPKR--EWFKSDVALRQGGLHNSQLLD-------SGDLIISSLQLADGGNYSCQVDNGIGT 1396
            .|||.|..  :|.|.     ..|..:...:|       :|..:|.:::..|.|.|||..:|..|:
  Rat  1308 KAVGDPSPAVKWMKD-----SNGTPSLVTIDGRRSIFSNGSFVIRTVKAEDSGYYSCVANNNWGS 1367

  Fly  1397 DRLTHTLIVQVPPTAPVLYVTSATSSSILMHWKCGFTGNAPITGYTLFYRRANGNT-DEMQLSRH 1460
            |.:...|.|||||..|.|.|:..|||||.:.|..|..|.:.|.||.|.|...|... ....:|..
  Rat  1368 DEIILNLQVQVPPDQPRLTVSKTTSSSITLSWLPGDNGGSSIRGYILQYSEDNSEQWGSFPISPS 1432

  Fly  1461 ASSHELKGLMCGSTYQIHLSAQNKVGTSPTSTILHVRTQGQSPGHPASTALLAP-NSTSLLVRLH 1524
            ..|:.|:.|.||:.|:..|:|||.||....|.|:..:|.|:.|.......|.|. |:|.:.:.|.
  Rat  1433 ERSYRLENLKCGTWYKFTLTAQNGVGPGRISEIIEAKTLGKEPQFSKEQELFASINTTRVRLNLI 1497

  Fly  1525 SWPDNGCPLLYFVLQYRAVTDDPDAEWVLVSNALKPQRRIVINNLQPSTLYQLRMEAHNVAGISQ 1589
            .|.|.|||:..|.|:||..   ....|. .:......:..::.:||.:|.|:|:|...|.||.::
  Rat  1498 GWNDGGCPITSFTLEYRPF---GTTVWT-TAQRTSLSKSYILYDLQEATWYELQMRVCNSAGCAE 1558

  Fly  1590 AEFNFVTLTKDGDPPPPEIMHRGRSGQTTVIFANINLLIPTIAAVSGMFCTIIMIIVCYRH---- 1650
            .:.||.||..||...||.|....:|.:.......:.:|:.....:.|:....::::|..|.    
  Rat  1559 KQANFATLNYDGSTIPPLIKSVVQSEEGLTTNEGLKILVTISCILVGVLLLFVLLLVVRRRRREQ 1623

  Fly  1651 ---MLKNAPPLAEQSQIQKESLENRANSEAAQRERYYATIHKVSMQNNDKIPETSEDISPYATFQ 1712
               .|::|..|||. .:.|.:..:...|:..|..|.:..|.:..:...::  :|.|.|...:|..
  Rat  1624 RLKRLRDAKSLAEM-LMSKNTRTSDTLSKQQQTLRMHIDIPRAQLLIEER--DTMETIDDRSTVL 1685

  Fly  1713 LSEAG-GNMSQPHHGGPANTLLHSFMYHERALAEG----CSSPPPAASKNRRRHSRKTEPESEES 1772
            |::|. |..::.    .:.|:.|:..|...:.|.|    .|...|..:...||:: |..|.:...
  Rat  1686 LTDADFGEAAKQ----KSLTVTHTVHYQSVSQATGPLVDVSDARPGTNPTTRRNA-KAGPTARNR 1745

  Fly  1773 ESDQ------------------------------DQLTSSRTESSNQHEGKIKHSIIYHGAQSST 1807
            .:.|                              |:.:.|.:.|.:|...:.:.|::...:.|||
  Rat  1746 YASQWTLNRPHPTISAHTLTTDWRLPTPRATGSVDKESDSYSVSPSQDTDRARSSMVSTESASST 1810

  Fly  1808 SSDLSPMSEQKSLPRRGRSRYHHQQYQFSTNTTPRHHNSNKMNNNTTSNTNT-TATNTTATPSTS 1871
            ..:|:...|...:         .:|.:.:..|......|:..:...|:.||. |.:.|::|||.|
  Rat  1811 YEELARAYEHAKM---------EEQLRHAKFTITECFISDTSSEQLTAGTNEYTDSLTSSTPSES 1866

  Fly  1872 SNSNKILSPRGGNLKSISSTFKSQDS---IQCHIPTLVKSPSISTQQQKQFHKQQLQNSSTNNSQ 1933
                       |..:..:|..|.||.   :...:|              :.|:..|:..|:.:..
  Rat  1867 -----------GICRFTASPPKPQDGGRVVNMAVP--------------KAHRPVLETRSSKSRH 1906

  Fly  1934 HSSSNPNSSSLKQQQPLLITPKLHQLEANGQELLGLDGIGNSPLV----ACMPPSSQFRPIPHKS 1994
            ..:..|    |:....|:..|...:::.    ||.....|.|..:    ||:.|... |.:...:
  Rat  1907 QLTHVP----LRALGDLIHLPPYLRMDF----LLNRGAPGTSRDLSLGQACLEPQKS-RTLKRPT 1962

  Fly  1995 IMPAHEP-PHHHNHSQQSHPHQQQQQQQHPGTLLNPSTAMLSSKFFTAPTLPKXDTAN-GGSEYV 2057
            ::   || |...:.|..|....||..||.                 ...|||:.:.|. |.:..:
  Rat  1963 VL---EPTPMEASSSTSSTREGQQSWQQG-----------------AVATLPQREGAELGQAAKM 2007

  Fly  2058 GGAMEA-MDGFGYDSG 2072
            ..:.|: :|..|:..|
  Rat  2008 SSSQESLLDSRGHLKG 2023

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Dscam2NP_001261500.1 Ig 51..127 CDD:299845 27/75 (36%)
Ig 138..>203 CDD:299845 20/64 (31%)
I-set 238..327 CDD:254352 30/89 (34%)
Ig 247..327 CDD:299845 27/80 (34%)
I-set 332..418 CDD:254352 25/93 (27%)
IGc2 344..407 CDD:197706 19/68 (28%)
IG_like 432..517 CDD:214653 36/84 (43%)
IGc2 436..507 CDD:197706 31/70 (44%)
I-set 521..610 CDD:254352 32/89 (36%)
IGc2 533..597 CDD:197706 23/64 (36%)
Ig 630..699 CDD:143165 33/68 (49%)
IG_like 714..802 CDD:214653 30/87 (34%)
Ig 725..802 CDD:299845 28/76 (37%)
Ig 823..894 CDD:143165 23/71 (32%)
FN3 906..1006 CDD:238020 27/102 (26%)
FN3 1013..1111 CDD:238020 37/98 (38%)
FN3 1119..1209 CDD:238020 41/90 (46%)
FN3 1219..1313 CDD:238020 30/98 (31%)
Ig 1336..1402 CDD:143165 21/74 (28%)
FN3 1409..1498 CDD:238020 33/89 (37%)
FN3 1515..1588 CDD:238020 22/72 (31%)
DscamXP_038943864.1 Ig 26..121 CDD:416386 33/94 (35%)
Ig strand A' 33..37 CDD:409353 1/3 (33%)
Ig strand B 40..49 CDD:409353 3/8 (38%)
Ig strand C 55..61 CDD:409353 2/5 (40%)
Ig strand C' 63..66 CDD:409353 1/2 (50%)
Ig strand D 72..75 CDD:409353 1/2 (50%)
Ig strand E 80..85 CDD:409353 2/4 (50%)
Ig strand F 98..106 CDD:409353 3/7 (43%)
Ig strand G 109..121 CDD:409353 5/11 (45%)
Ig 125..210 CDD:416386 29/89 (33%)
Ig strand A 126..130 CDD:409353 2/3 (67%)
Ig strand A' 132..136 CDD:409353 0/3 (0%)
Ig strand B 139..149 CDD:409353 2/9 (22%)
Ig strand C 157..163 CDD:409353 4/5 (80%)
Ig strand C' 164..167 CDD:409353 0/7 (0%)
Ig strand E 179..185 CDD:409353 3/5 (60%)
Ig strand F 191..201 CDD:409353 2/9 (22%)
IGc2 239..300 CDD:197706 23/65 (35%)
Ig strand B 242..246 CDD:409353 1/3 (33%)
Ig strand C 255..259 CDD:409353 1/3 (33%)
Ig strand F 290..295 CDD:409353 2/4 (50%)
Ig 313..395 CDD:416386 24/88 (27%)
Ig strand A 314..319 CDD:409353 0/4 (0%)
Ig strand A' 322..326 CDD:409353 0/3 (0%)
Ig strand B 329..339 CDD:409353 2/9 (22%)
Ig strand C 344..350 CDD:409353 2/5 (40%)
Ig strand C' 351..354 CDD:409353 1/2 (50%)
Ig strand E 368..374 CDD:409353 1/5 (20%)
Ig strand F 381..389 CDD:409353 5/7 (71%)
Ig 406..501 CDD:416386 39/94 (41%)
Ig strand A 406..409 CDD:409353 1/2 (50%)
Ig strand A' 415..419 CDD:409353 1/3 (33%)
Ig strand B 422..431 CDD:409353 4/8 (50%)
Ig strand C 436..442 CDD:409353 2/5 (40%)
Ig strand C' 444..447 CDD:409353 0/2 (0%)
Ig strand D 452..460 CDD:409353 2/7 (29%)
Ig strand E 464..473 CDD:409353 4/8 (50%)
Ig strand F 480..488 CDD:409353 4/7 (57%)
Ig strand G 491..501 CDD:409353 4/9 (44%)
Ig 504..593 CDD:416386 30/88 (34%)
Ig strand A 505..507 CDD:409353 0/1 (0%)
Ig strand A' 512..516 CDD:409353 1/3 (33%)
Ig strand B 519..526 CDD:409353 0/6 (0%)
Ig strand C 533..539 CDD:409353 2/5 (40%)
Ig strand C' 540..542 CDD:409353 0/1 (0%)
Ig strand D 549..553 CDD:409353 2/3 (67%)
Ig strand E 557..563 CDD:409353 2/5 (40%)
Ig strand F 571..579 CDD:409353 4/7 (57%)
Ig strand G 583..593 CDD:409353 3/9 (33%)
Ig 596..686 CDD:416386 40/92 (43%)
Ig strand A 597..599 CDD:409353 1/1 (100%)
Ig strand B 611..620 CDD:409353 2/8 (25%)
Ig strand C 625..632 CDD:409353 4/6 (67%)
Ig strand C' 634..636 CDD:409353 1/1 (100%)
Ig strand D 643..648 CDD:409353 0/4 (0%)
Ig strand E 651..658 CDD:409353 3/6 (50%)
Ig strand F 665..673 CDD:409353 4/7 (57%)
Ig strand G 676..685 CDD:409353 3/8 (38%)
Ig_DSCAM 689..784 CDD:409397 33/94 (35%)
Ig strand B 707..711 CDD:409397 1/3 (33%)
Ig strand C 720..724 CDD:409397 2/3 (67%)
Ig strand E 749..753 CDD:409397 3/3 (100%)
Ig strand F 763..768 CDD:409397 3/4 (75%)
Ig strand G 777..780 CDD:409397 1/2 (50%)
Ig_DSCAM 785..884 CDD:409398 29/101 (29%)
Ig strand B 805..809 CDD:409398 0/3 (0%)
Ig strand C 818..822 CDD:409398 0/3 (0%)
Ig strand E 848..852 CDD:409398 1/3 (33%)
Ig strand F 862..867 CDD:409398 1/4 (25%)
Ig strand G 875..878 CDD:409398 0/2 (0%)
FN3 885..978 CDD:238020 28/102 (27%)
FN3 986..1083 CDD:238020 37/98 (38%)
FN3 1091..1184 CDD:238020 42/95 (44%)
FN3 1189..1278 CDD:238020 30/96 (31%)
Ig_3 1287..1363 CDD:404760 25/80 (31%)
Ig strand B 1303..1307 CDD:409353 1/3 (33%)
Ig strand C 1316..1320 CDD:409353 0/3 (0%)
Ig strand E 1342..1346 CDD:409353 1/3 (33%)
Ig strand F 1356..1361 CDD:409353 3/4 (75%)
FN3 1380..1470 CDD:238020 33/89 (37%)
FN3 1486..1555 CDD:238020 20/72 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 136 1.000 Domainoid score I4784
eggNOG 1 0.900 - - E1_KOG3510
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 968 1.000 Inparanoid score I306
OMA 1 1.010 - - QHG47134
OrthoDB 1 1.010 - - D10185at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 1 1.000 - - mtm9015
orthoMCL 1 0.900 - - OOG6_101656
Panther 1 1.100 - - O PTHR10075
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X1391
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.840

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