DRSC/TRiP Functional Genomics Resources

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Protein Alignment Mdr65 and abcb8

DIOPT Version :10

Sequence 1:NP_476831.1 Gene:Mdr65 / 38726 FlyBaseID:FBgn0004513 Length:1302 Species:Drosophila melanogaster
Sequence 2:NP_001121515.1 Gene:abcb8 / 100158634 XenbaseID:XB-GENE-1010256 Length:688 Species:Xenopus tropicalis


Alignment Length:634 Identity:218/634 - (34%)
Similarity:320/634 - (50%) Gaps:86/634 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly    55 CCIKALTLPAVV-----------------IIYSEFTSMLVDRAMQFGTSSNVHALPLFGGG--KT 100
            |.::.:..|.:|                 ::..:..::|....:.||.:.....:||..|.  ..
 Frog    83 CQVELIAPPLIVPQGARPEPEFNWAEFWKLLRPQLIALLTAVLLAFGAALLNIRIPLMLGELVNV 147

  Fly   101 LTNASREENNEALYDDS-------ISYGI--LLTIASVVMFISGIFSVDVFNMVALRQVTRMRIK 156
            ::..:||.....|.:..       ..||.  |||...:|:          .:.|..|....||..
 Frog   148 VSRYTREHAGNYLQEVQGPALKLLCLYGAQGLLTCGYIVL----------LSRVGERVAGSMRKS 202

  Fly   157 LFSSVIRQDIGWHDLASKQNFTQSMVDDVEKIRD-----------GISEKVGHFVYLVVGFIITV 210
            ||.|::|||:.:.|..........:..||::.:.           .:::.||.|:.|        
 Frog   203 LFFSLLRQDVAFFDAEKTGLLVNRLTSDVQEFKSSFKQVISQGLRSLTQTVGCFLSL-------- 259

  Fly   211 AISFSYGWKLTLAVSSYIPLVILLNYYVAKFQGKLTAREQESYAGAGNLAEEILSSIRTVVSFGG 275
               :....|||..:...:|:::.....:..|..||:.|.||..|.|..||:|.|.::|||.:|..
 Frog   260 ---YYISPKLTGLLLVVMPVLVGSGALIGSFLRKLSRRAQEQVARATGLADEALGNVRTVKAFAM 321

  Fly   276 EKSEVQRYENFLVPARKASQWKG----AFSGLSDAVLKSMLYLSCAGAFWYGVNLIIDDRNVENK 336
            |..|::.|...:..:...::..|    .|.|||:.||..::    .|..:.|.:|      :.:|
 Frog   322 ESREMELYSAEVDKSSGQNEVLGVGIAVFQGLSNVVLNCIV----LGTIFAGGSL------MSSK 376

  Fly   337 EYTPAILMIAFFGIIVGADNIARTAPFLESF--ATARGCAT--NLFKVIDLTSKIDPLSTDGKLL 397
            |.:...||    ..:|.:..:.|:...:...  ...||.:.  .:|:.:.|...| |||...|| 
 Frog   377 ELSAGELM----SFLVASQTVQRSMANMSVLFGQVVRGLSAGGRVFEFMSLEPTI-PLSGGFKL- 435

  Fly   398 NYGLRGDVEFQDVFFRYPSRPEVIVHRGLNIRIRAGQTVALVGSSGCGKSTCVQLLQRFYDPVFG 462
             ..|||::.|:||.|.||:||...|.|..::||..|:||||||.||.||||...||:|||||..|
 Frog   436 -PVLRGEIHFKDVSFSYPTRPGHEVLRSFDLRIPHGKTVALVGQSGGGKSTVAALLERFYDPTEG 499

  Fly   463 SVLLDDLDIRKYNIQWLRSN-IAVVGQEPVLFLGTIAQNISYGKPGATQKEIEAAATQAGAHEFI 526
            :|.||.:|||..:..|||.. |..:.||||||..||.:||.:|:|.||..|:..||.||.|..||
 Frog   500 AVQLDGVDIRILDPSWLRGEVIGFINQEPVLFGTTIIENIRFGRPDATDAEVHEAAIQANADSFI 564

  Fly   527 TNLPESYRSMIGERGSQLSGGQKQRIAIARALIQNPKILLLDEATSALDYQSEKQVQQALDLASK 591
            .:.||.|.:|:||||..||||||||:||||||:::||||:|||||||||.:||:.||.|||.|..
 Frog   565 RSFPEGYNTMLGERGVTLSGGQKQRVAIARALLKDPKILILDEATSALDTESERAVQVALDRARS 629

  Fly   592 GRTTIVVSHRLSAIRGADKIVFIHDGKVLEEGSHDDLMALEGAYYNMVR 640
            |||.:|::||||.|..||.||.:..|:|.|.|:|.||:...|.|.:::|
 Frog   630 GRTVLVIAHRLSTISEADFIVVLSKGQVAEFGTHQDLLRRGGLYADLIR 678

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Mdr65NP_476831.1 MdlB 118..641 CDD:440747 206/545 (38%)
MdlB 711..1299 CDD:440747
abcb8NP_001121515.1 MdlB 106..684 CDD:440747 215/611 (35%)
Blue background indicates that the domain is not in the aligned region.

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