DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and PZF1

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_015512.1 Gene:PZF1 / 856316 SGDID:S000006390 Length:429 Species:Saccharomyces cerevisiae


Alignment Length:122 Identity:34/122 - (27%)
Similarity:51/122 - (41%) Gaps:16/122 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   321 HL----CIYCGKVYSRKYGLKIHIRTHTG---FKPLKCKF--CLRPFGDPSNLNKHVRLHLQTHP 376
            ||    |.:|.|.:.|.|.|:.||..|..   ..|.:|.|  |.:.|...|.|..|::   ..||
Yeast   159 HLHKLTCPHCNKSFQRPYRLRNHISKHHDPEVENPYQCTFAGCCKEFRIWSQLQSHIK---NDHP 220

  Fly   377 SSSAGVADG---GASGADMDGDVDIEGETDADYQCHVC-HKSFPRRRDLQRHMETRH 429
            .....:...   |.:|..|...:..:.....:::||:| ..||.|:.||..|..:.|
Yeast   221 KLKCPICSKPCVGENGLQMHMIIHDDSLVTKNWKCHICPDMSFSRKHDLLTHYGSIH 277

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 12/37 (32%)
C2H2 Zn finger 323..343 CDD:275368 8/19 (42%)
C2H2 Zn finger 351..371 CDD:275368 7/21 (33%)
zf-C2H2 406..427 CDD:395048 9/21 (43%)
C2H2 Zn finger 408..427 CDD:275368 9/19 (47%)
PZF1NP_015512.1 COG5048 46..427 CDD:227381 34/122 (28%)
C2H2 Zn finger 54..74 CDD:275368
C2H2 Zn finger 82..102 CDD:275368
C2H2 Zn finger 110..130 CDD:275368
C2H2 Zn finger 136..155 CDD:275368
C2H2 Zn finger 165..185 CDD:275368 8/19 (42%)
C2H2 Zn finger 196..216 CDD:275368 7/19 (37%)
C2H2 Zn finger 224..244 CDD:275368 3/19 (16%)
C2H2 Zn finger 255..277 CDD:275368 9/21 (43%)
Blue background indicates that the domain is not in the aligned region.

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