DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and CG8388

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_611075.1 Gene:CG8388 / 36763 FlyBaseID:FBgn0034062 Length:572 Species:Drosophila melanogaster


Alignment Length:376 Identity:77/376 - (20%)
Similarity:118/376 - (31%) Gaps:140/376 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 IQGNSRYMCHLCHLTFETPHPLKIHL---------ALGCGRSAMD----ILWMRLHY-------- 218
            |:.:.:..||:|:|..|....:..|:         |:.|.|..:.    :..:|.|.        
  Fly   226 IREHYKVQCHICNLPMEDFSEMLAHVRREHKQRGYAMCCNRKFLKRGVLVDHLRRHQDPETFKCS 290

  Fly   219 ----------ALKAAARSHTETQHSPIPATSSTSSA----------SPTHSPPPQMPPRFSAFRP 263
                      :|:...|.|.......:......|.|          ..||.|..|.         
  Fly   291 ICGRVMGHRRSLELHMRMHEIKSRGRLYRCEQCSKAFYSAVVYERHKLTHIPREQW--------- 346

  Fly   264 IAALTQSLPMVPVTTAATPLSYLPSMSMATAPLSTNPMNAAAQI-----------EAIVSNM--- 314
                     .||.|....  :| ||.......:....:|..|:|           ||:..:|   
  Fly   347 ---------KVPCTHCEK--TY-PSQYTMQQHVKLVHLNLYAKICDVCGKSIRGREALARHMEEH 399

  Fly   315 -GASKQGHLCIYCGKVYSRKYGLKIHIR-THT--GFKPLKCKFCLR--PFGDPSNLNKHVRLHLQ 373
             |..:....|..|..:.:.||||..||: .||  ..:|::|:|||:  |     :|..|......
  Fly   400 TGGPQAAIKCHLCDSMLTTKYGLARHIKMMHTAENLQPMQCEFCLKICP-----SLQAHQHHIKY 459

  Fly   374 THPSSSAGVADGGASGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHMETRHG-------- 430
            ||                         .|...:||.:|.|:|.|..:|:.||.|..|        
  Fly   460 TH-------------------------NTARSHQCPMCEKAFKRPNELKEHMTTHTGEVLYTCPH 499

  Fly   431 -------GHHSHSH---------SESRSS--STSTSSTTTMTATV--TTST 461
                   ..:.|:|         .|:|..  :.|..|.|.:..:|  ||.|
  Fly   500 CPQTFNSNANMHAHRKKVHRKEWEENRHKRLNRSRKSDTIIAVSVRKTTET 550

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 26/119 (22%)
C2H2 Zn finger 323..343 CDD:275368 8/20 (40%)
C2H2 Zn finger 351..371 CDD:275368 7/21 (33%)
zf-C2H2 406..427 CDD:395048 9/20 (45%)
C2H2 Zn finger 408..427 CDD:275368 8/18 (44%)
CG8388NP_611075.1 zf-AD 3..78 CDD:462262
C2H2 Zn finger 264..281 CDD:275368 3/16 (19%)
C2H2 Zn finger 289..309 CDD:275368 2/19 (11%)
C2H2 Zn finger 320..340 CDD:275368 2/19 (11%)
C2H2 Zn finger 350..369 CDD:275368 4/21 (19%)
C2H2 Zn finger 440..461 CDD:275368 7/25 (28%)
C2H2 Zn finger 469..489 CDD:275368 8/19 (42%)
C2H2 Zn finger 497..515 CDD:275368 2/17 (12%)
Blue background indicates that the domain is not in the aligned region.

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