DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and CG1603

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_610290.2 Gene:CG1603 / 35683 FlyBaseID:FBgn0033185 Length:586 Species:Drosophila melanogaster


Alignment Length:111 Identity:29/111 - (26%)
Similarity:44/111 - (39%) Gaps:34/111 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly   323 CIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVR-LHLQTHPSSSAGVADGG 386
            |.||.|.::....||:|...|||.:|..|..|.:.|.....|:.||. :||...|          
  Fly   478 CQYCEKSFAVDTDLKVHTLIHTGERPHVCDICGKTFRLKLLLDHHVNGVHLNIRP---------- 532

  Fly   387 ASGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHMETRHGGH 432
                               |.|::|.|:|.::.:|..|::    ||
  Fly   533 -------------------YSCNMCTKTFRKKFELANHIK----GH 555

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 11/28 (39%)
C2H2 Zn finger 323..343 CDD:275368 7/19 (37%)
C2H2 Zn finger 351..371 CDD:275368 6/20 (30%)
zf-C2H2 406..427 CDD:395048 7/20 (35%)
C2H2 Zn finger 408..427 CDD:275368 6/18 (33%)
CG1603NP_610290.2 MADF_DNA_bdg 202..287 CDD:463144
MADF_DNA_bdg 321..408 CDD:463144
C2H2 Zn finger 420..441 CDD:275368
COG5048 <424..583 CDD:227381 29/111 (26%)
C2H2 Zn finger 450..471 CDD:275368
C2H2 Zn finger 478..498 CDD:275368 7/19 (37%)
C2H2 Zn finger 506..527 CDD:275368 6/20 (30%)
C2H2 Zn finger 535..555 CDD:275368 6/23 (26%)
C2H2 Zn finger 563..583 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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