DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and Zfp335

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_030107665.1 Gene:Zfp335 / 329559 MGIID:2682313 Length:1338 Species:Mus musculus


Alignment Length:506 Identity:103/506 - (20%)
Similarity:162/506 - (32%) Gaps:177/506 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 TTAQLDSLEQKRSASLIFRIEQLLPSTSITPTSMTTSSTETTLTATTSTASP------AKRMRMS 61
            |...||.|       |....::.|.:|::....:.:...|..||:|....||      ...:.|:
Mouse   793 TQTALDLL-------LNMSAQRELGATALQVAVVKSEGIEAELTSTGGQPSPEDTTPRVVTLHMA 850

  Fly    62 NPRPGVYA-SQYTPKDTCSMAIPTSALLGS-----TVMPTDGSRSHCQLSNGELIVSGSLLRQIK 120
            .....|.| ||..|.|...:|:|:....|:     |..|.:|..|          .||...|:  
Mouse   851 ESGSSVAAESQLGPSDLQQIALPSGPFGGASYSVITAPPVEGRTS----------ASGPPYRE-- 903

  Fly   121 LSEDVYSFNAIFELHGGQVRVRLVRDVARE---DEIVAWFGE-----ELVLLMGIPFLTPLNIQG 177
                        |..|...:..:|.|..:|   ..|:|..|.     ||.....|.|.:|..:..
Mouse   904 ------------EPPGEAAQAVVVSDTLKEAGTHYIMAADGTQLHHIELTADGSISFPSPDTLAP 956

  Fly   178 NSRYMCHLCHLTFETPHPLKIHLALGCG---RSAMDILWMRLHYALKAAARSHTETQHSPIPATS 239
            .:::             ||     |.||   |...::|             |.|:|.|......|
Mouse   957 GTKW-------------PL-----LQCGGPPRDGSEVL-------------SPTKTHHMGGSQGS 990

  Fly   240 STSSASPTHSPPPQMPPRFSAFRPIAALTQSLPMVPVTTAATPLSYLPSMSMATAPLSTNPMNAA 304
            ||        |||             |.:.:|.:|           :|....:.|..||...:..
Mouse   991 ST--------PPP-------------AASHTLGLV-----------VPQSPPSAAASSTKKFSCK 1023

  Fly   305 AQIEAIVS--NMGASKQGHL---------CIYCGKVYSRKYGLKIHIRTHTGFKPLKCKFCLRPF 358
            ...||..|  .|.:.|:.|.         |.:..:.:..   ::.|:..|:..:|.:|..|    
Mouse  1024 VCSEAFPSRAEMESHKRAHAGPAAFKCPDCPFSARQWPE---VRAHMAQHSSLRPHQCNQC---- 1081

  Fly   359 GDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQR 423
            ...|...|.:|.|:.||.:                         :..:.||||.:.|.|...|:.
Mouse  1082 SFASKNKKDLRRHMLTHTN-------------------------EKPFSCHVCGQRFNRNGHLKF 1121

  Fly   424 HMETRHGGHHSHSHSESRSSSTSTSSTTTMT----------ATVTTSTSKS 464
            |::..|.       .:.|.:.|||:.....|          ||:.|:...|
Mouse  1122 HIQRLHS-------IDGRKTGTSTARAPAQTIILNSEEETLATLHTAFQSS 1165

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 20/112 (18%)
C2H2 Zn finger 323..343 CDD:275368 2/19 (11%)
C2H2 Zn finger 351..371 CDD:275368 5/19 (26%)
zf-C2H2 406..427 CDD:395048 8/20 (40%)
C2H2 Zn finger 408..427 CDD:275368 8/18 (44%)
Zfp335XP_030107665.1 C2H2 Zn finger 469..489 CDD:275368
C2H2 Zn finger 499..519 CDD:275368
zf-H2C2_2 511..536 CDD:463886
zf-H2C2_5 525..548 CDD:404746
C2H2 Zn finger 527..547 CDD:275368
C2H2 Zn finger 566..586 CDD:275368
zf-H2C2_2 578..603 CDD:463886
C2H2 Zn finger 594..614 CDD:275368
C2H2 Zn finger 625..645 CDD:275368
C2H2 Zn finger 653..674 CDD:275368
C2H2 Zn finger 682..701 CDD:275368
C2H2 Zn finger 1022..1042 CDD:275368 5/19 (26%)
SFP1 <1027..1127 CDD:227516 26/131 (20%)
C2H2 Zn finger 1050..1070 CDD:275368 2/22 (9%)
zf-H2C2_5 1076..1100 CDD:404746 8/27 (30%)
C2H2 Zn finger 1078..1098 CDD:275368 6/23 (26%)
zf-H2C2_2 1090..1115 CDD:463886 9/49 (18%)
C2H2 Zn finger 1106..1127 CDD:275368 8/20 (40%)
Blue background indicates that the domain is not in the aligned region.

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