DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Prdm13 and Zfp513

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001012110.1 Gene:Zfp513 / 313913 RGDID:1310456 Length:541 Species:Rattus norvegicus


Alignment Length:356 Identity:73/356 - (20%)
Similarity:103/356 - (28%) Gaps:142/356 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   181 YMCHLCHLTFETPHPLKIHL-------ALGCGR---SAMDILWMRLHYALKAAARSHT-----ET 230
            |.|.||.........||.|:       ...|||   ::..::.:..|      .|:||     ..
  Rat   150 YSCRLCAFVSHYSSHLKRHMQTHSGEKPFRCGRCPYASAQLVNLTRH------TRTHTGEKPYRC 208

  Fly   231 QHSPIPATS--STSSASPTHSPPPQMPPRFSAFRPIAALTQSLPMVPVTTAAT------PLSYLP 287
            .|.|...:|  :......||:.||..|.....|| ..|...:.|..|.....|      ....||
  Rat   209 PHCPFACSSLGNLRRHQRTHTGPPTPPCPTCGFR-CCAPRPTRPPSPTEQEGTMPRRSEDALILP 272

  Fly   288 SMSMATAPLSTNPMNAAAQI--------------------------------EAIVSNMGASKQG 320
            .:|:...|..|:.:....|:                                |...|.:|.:..|
  Rat   273 DLSLHVPPGGTSFLPDCGQLRGEGEGLCGTGSEPLPELLFPWTCRGCGQELEEGEGSRLGTAMCG 337

  Fly   321 ------------------------------------HL--------------CIYCGKVYSRKYG 335
                                                ||              |..|....:....
  Rat   338 RCMRGESGGGGSGGPQGPSDKGFACSLCPFATHYPNHLARHMKTHSGEKPFRCARCPYASAHLDN 402

  Fly   336 LKIHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEG 400
            ||.|.|.|||.||.||..|....|:.:||.:|.|:|                ||           
  Rat   403 LKRHQRVHTGEKPYKCPLCPYACGNLANLKRHGRIH----------------SG----------- 440

  Fly   401 ETDADYQCHVCHKSFPRRRDLQRHMETRHGG 431
              |..::|.:|:.|..:..:|:||| .||.|
  Rat   441 --DKPFRCSLCNYSCNQSMNLKRHM-LRHTG 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 33/189 (17%)
C2H2 Zn finger 323..343 CDD:275368 6/19 (32%)
C2H2 Zn finger 351..371 CDD:275368 7/19 (37%)
zf-C2H2 406..427 CDD:395048 7/20 (35%)
C2H2 Zn finger 408..427 CDD:275368 7/18 (39%)
Zfp513NP_001012110.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..120
C2H2 Zn finger 152..172 CDD:275368 6/19 (32%)
COG5048 176..>228 CDD:227381 10/57 (18%)
C2H2 Zn finger 180..200 CDD:275368 5/25 (20%)
zf-H2C2_2 192..217 CDD:463886 6/30 (20%)
C2H2 Zn finger 208..228 CDD:275368 3/19 (16%)
C2H2 Zn finger 362..382 CDD:275368 2/19 (11%)
zf-H2C2_2 374..399 CDD:463886 4/24 (17%)
C2H2 Zn finger 390..410 CDD:275368 6/19 (32%)
zf-H2C2_2 402..425 CDD:463886 12/22 (55%)
COG5048 414..>487 CDD:227381 24/85 (28%)
C2H2 Zn finger 418..438 CDD:275368 7/19 (37%)
C2H2 Zn finger 446..466 CDD:275368 7/20 (35%)
C2H2 Zn finger 474..493 CDD:275368
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 492..541
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.