DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and znf462

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_002934034.2 Gene:znf462 / 100492944 XenbaseID:XB-GENE-976911 Length:2458 Species:Xenopus tropicalis


Alignment Length:387 Identity:76/387 - (19%)
Similarity:128/387 - (33%) Gaps:120/387 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   114 SLLRQIKLSEDVYSFNAIFELHGGQVRVRLVRDVAREDEIVAWFGEELVLLMG--IPFLTPLNIQ 176
            |:|..|...:||.|..|.:......:.|....|          .|::.:|..|  :|..|..:..
 Frog  1325 SVLFNIIKEKDVNSEEASYSAEKPTINVEPQMD----------SGDDFILSQGKTLPLQTNNSAL 1379

  Fly   177 GNSRYMCHLCHLTFETPHPLKIHLAL---GCGRSAMDI-------------------LWMRLHYA 219
            .:|.|:|.:||..:...|.|..|...   |....|.|.                   :..|:|..
 Frog  1380 SSSPYLCTVCHSEYNNLHGLLTHYGKKHPGMKVKAADFAQEVDINPGAVYKCRHCPYINTRIHGV 1444

  Fly   220 LKAAARSHTETQHSPIPAT----------SSTSSASPTHSPPPQMPPRFSAFRPIAALTQSLPMV 274
            |     :|.:.:|..:..|          |:..|.:.:..........:.|:|     .:..|..
 Frog  1445 L-----THYQKRHPSVKVTAEDFVHDVEQSTEMSQNESDENSRIFKQGYGAYR-----CKICPYT 1499

  Fly   275 PVTTAATPLSY-----LPSMSMATAP-----------LSTNPMNAAAQIEAIVSNMGASKQGHLC 323
            ..|.....:.|     .|...|.::|           |..:|......:||.|.. |.:|     
 Frog  1500 HGTLEKLKIHYEKYHDQPEPDMLSSPKDFASVETDVLLDEHPPQTVVTLEAAVVK-GPTK----- 1558

  Fly   324 IYCGKVYSRKYGLKIHIRTHTGFKPLKCK-FCLRPFGDPSNLNKHVRL---HLQTHPSSSAGVAD 384
                  |.|.     |:..||.|:...|| ||....|    :.:|.|:   :::..|        
 Frog  1559 ------YKRN-----HMAPHTVFRCQLCKYFCSTRKG----IARHYRIKHNNVRAQP-------- 1600

  Fly   385 GGASGADMDGDVDIEGETDADYQCHVCHKSFPRRRDLQRHMETRH--GGHHSHSHSESRSSS 444
                          ||:.:. ::|.:|..:.|.|:.|..|.:.||  ..:::|..:.||:.|
 Frog  1601 --------------EGKNNL-FKCALCSYTNPIRKGLAAHYQKRHDIDAYYTHCLAASRTVS 1647

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 21/117 (18%)
C2H2 Zn finger 323..343 CDD:275368 3/19 (16%)
C2H2 Zn finger 351..371 CDD:275368 7/23 (30%)
zf-C2H2 406..427 CDD:395048 6/20 (30%)
C2H2 Zn finger 408..427 CDD:275368 6/18 (33%)
znf462XP_002934034.2 C2H2 Zn finger 1963..1983 CDD:275370
C2H2 Zn finger 1997..2017 CDD:275368
C2H2 Zn finger 2026..2047 CDD:275368
C2H2 Zn finger 2055..2076 CDD:275368
C2H2 Zn finger 2221..2241 CDD:275368
C2H2 Zn finger 2267..2287 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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