DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and prdm13

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:XP_002932206.1 Gene:prdm13 / 100490238 XenbaseID:XB-GENE-960155 Length:632 Species:Xenopus tropicalis


Alignment Length:660 Identity:148/660 - (22%)
Similarity:211/660 - (31%) Gaps:303/660 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    67 VYASQYTPKDTCSMAIPTSALLGSTV-----------MPTDGSRSHCQLSNGELIVSG------- 113
            :||      |.|   ||....||..:           ....|.:...:...|:|:...       
 Frog    11 IYA------DNC---IPAGLRLGPIMGIFKLGKYLSDRREPGPKKKVRFVRGDLLDEAGGPATEW 66

  Fly   114 -SLLRQIKLSEDVYSFNAIFELHGGQVRVRLVRDVAREDEIVAWFGEELVLLMGI-PFLTPLNIQ 176
             .|:|..:.::: ....||.:|.|||:..|.:|||...:|:..|:...|.....| ...||.:.:
 Frog    67 MGLIRAARNNQE-QILEAISDLPGGQIYYRTLRDVQPGEELTVWYSSSLAQWFDISTTATPTHDE 130

  Fly   177 -GNSRYMCHLCHLTFETPHPLKIH----------------------------------------- 199
             |..||:|..|..||:.|:.||.|                                         
 Frog   131 KGEERYICWYCWRTFKFPNTLKAHVHFHCSLNSSRGFLHNDQIRTSQSFSASPKISEGVSNTAPP 195

  Fly   200 ------LALGCGR------SAMDILWMRLHYALKAAARSHTE----------------------- 229
                  ||.|..|      :::..:..:|....||..:.|.|                       
 Frog   196 LRTNPQLANGASRDSIKREASLSPVLSKLGVIKKALGKEHQERALDMSVGSTRNHSQFIGIVGNA 260

  Fly   230 ------------------TQHSPIPATSST----------------------------------- 241
                              |..|.:|.|.|.                                   
 Frog   261 CGGNGMAFYPGIRSAFKPTGLSKLPHTDSAREDSKATSMGFSKLLGGIKPSRPGSEALISSHQSK 325

  Fly   242 -----------------------------------------SSASPT----HSPPP-------QM 254
                                                     ::.|||    |.|..       .:
 Frog   326 CLSTGDGSSSILSCATGLRGFPILSHLEETSAFKHVERGVHANLSPTSRYNHMPSAGLHFERFSI 390

  Fly   255 PPRFSAFRPIAALTQSLPMVPVTT------AATP-----------LSYLPSMSMATAPLSTNP-- 300
            || |...:..:| ..::|::|.|.      .:||           :.|..|:|...|..:.||  
 Frog   391 PP-FEGMKSYSA-ECNIPVMPFTVYNGELLYSTPYYPFKFHFSNLIKYPESVSYFNAGPAINPEL 453

  Fly   301 ------------------------MNAAAQIEAI----VSNMGASKQGHLCIYCGKVYSRKYGLK 337
                                    .....:||::    .|..|..|:||||:||||:||||||||
 Frog   454 GSIASSIDRELAMHSHQLSEIASEKGRGGRIESLAAGAASATGKPKKGHLCLYCGKLYSRKYGLK 518

  Fly   338 IHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPSSSAGVADGGASGADMDGDVDIEGET 402
            ||:|||||:||||||.||||||||||||||:|||                          .||.|
 Frog   519 IHMRTHTGYKPLKCKVCLRPFGDPSNLNKHIRLH--------------------------AEGNT 557

  Fly   403 DADYQCHVCHKSFPRRRDLQRHMETRHGG-----------HHSHSHSESRSSSTSTSSTTTMT-- 454
              .|:|..|.|...|||||:||:::||.|           ...:|.::.:|....:......|  
 Frog   558 --PYRCEHCGKVLVRRRDLERHVKSRHPGQTLSSKEQDPAEQQYSQADPKSEDNDSEVDVCFTDE 620

  Fly   455 -ATVTTSTSK 463
             :...|.:||
 Frog   621 QSDPETGSSK 630

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 48/155 (31%)
C2H2 Zn finger 323..343 CDD:275368 16/19 (84%)
C2H2 Zn finger 351..371 CDD:275368 17/19 (89%)
zf-C2H2 406..427 CDD:395048 11/20 (55%)
C2H2 Zn finger 408..427 CDD:275368 10/18 (56%)
prdm13XP_002932206.1 PR-SET_PRDM13 17..118 CDD:380974 22/101 (22%)
C2H2 Zn finger 504..524 CDD:275368 16/19 (84%)
zf-C2H2 504..524 CDD:395048 16/19 (84%)
zf-H2C2_2 517..>535 CDD:463886 15/17 (88%)
zf-C2H2 531..552 CDD:395048 18/20 (90%)
C2H2 Zn finger 532..552 CDD:275368 17/19 (89%)
C2H2 Zn finger 561..579 CDD:275368 10/17 (59%)

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