DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prdm13 and zfp64

DIOPT Version :10

Sequence 1:NP_648032.1 Gene:Prdm13 / 38713 FlyBaseID:FBgn0035687 Length:465 Species:Drosophila melanogaster
Sequence 2:NP_001373446.1 Gene:zfp64 / 100003733 ZFINID:ZDB-GENE-031118-80 Length:642 Species:Danio rerio


Alignment Length:549 Identity:105/549 - (19%)
Similarity:161/549 - (29%) Gaps:205/549 - (37%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 EQKRSASLIFRIEQ---LLPSTSIT------PTSMTTSSTETTLTATTSTASPAKRMRMSNPRPG 66
            :|..:..|.|..:|   .:|||.|:      ..|:.|..::...|.|.:..:|:|::     :|.
Zfish    28 QQYNNVELFFAHKQNCCQIPSTHISVRNAGASESLQTCVSKVKKTLTKAQKNPSKKL-----KPA 87

  Fly    67 V-------------YASQYTPKDTCSMAIPTSALLGSTVMPTDGSRS------------------ 100
            :             :.:||..||           :...::...|.|.                  
Zfish    88 LTQKRHICTFSGCTFKTQYGQKD-----------MERHILTHTGERPFECELCHKRFSRRDKLNL 141

  Fly   101 HCQLSNGE-----------LIVSGSLLRQIKLSEDVYSFNA----IFELHGGQVRVRLVRDVARE 150
            |.:|..||           ...|.||.:.:::..|...|..    ....:..|:.|.|       
Zfish   142 HSRLHTGEKPHKCKYCTYAAADSSSLKKHLRIHYDERPFKCQICPYASRNSSQLTVHL------- 199

  Fly   151 DEIVAWFGEELVLLMGIPFLTPLNIQGNSRYMCHLCHLTFETPHPLKIHLALGCGRSAMDILWMR 215
                                  .:..|::.:.|:.|...|:....||.|..:..|..........
Zfish   200 ----------------------RSHTGDAPFQCNQCDAKFKINSDLKRHSRVHSGEKPYKCDLCD 242

  Fly   216 LHYALKAAARSHTETQHSPIPA--------TSSTSSASPTHSPPPQMPPRFSAFRPIAALTQSLP 272
            ...|:||..:||...:||...:        ..||.:|...||...|                   
Zfish   243 YRCAMKANLKSHVHLKHSASDSFHCSKCDFQCSTKAALRHHSRQHQ------------------- 288

  Fly   273 MVPVTTAATPLSYLPSMSMATAPLSTNPMNAAAQIEAIVSNMGASKQGHLCIYCGKVYSRKYGLK 337
                  .|.||.                                      |..|....|.|..||
Zfish   289 ------PAQPLQ--------------------------------------CSECSYSCSSKGALK 309

  Fly   338 IHIRTHTGFKPLKCKFCLRPFGDPSNLNKHVRLHLQTHPS--SSAGVADGGASGADMDGDVD--- 397
            ||.|.|:..:|.||..|.......|||..|.|......|.  |.:|...|  :|.|:...:.   
Zfish   310 IHERVHSDERPFKCDLCSFASKQRSNLLIHTRKCHADKPDRLSKSGRISG--NGEDLTKPISSRY 372

  Fly   398 -IEGETDADYQCHVCHKSFPRRRDLQRHMETRHGGHHSHSHSESRSSST---------------- 445
             .:.|....|:|.:|..||.|...|:.|....:......||:::..:||                
Zfish   373 RAKLEATRAYRCDLCEASFVREDSLRSHKRQHNNITQQQSHNQTSQTSTKQPVQNIPEASIATES 437

  Fly   446 -STSSTTTMTATVTTS---------TSKS 464
             ||.:||.:...|..|         ||||
Zfish   438 PSTYNTTHLKIIVAPSLGSEASFVQTSKS 466

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prdm13NP_648032.1 KREPA <250..>352 CDD:483960 16/101 (16%)
C2H2 Zn finger 323..343 CDD:275368 9/19 (47%)
C2H2 Zn finger 351..371 CDD:275368 7/19 (37%)
zf-C2H2 406..427 CDD:395048 8/20 (40%)
C2H2 Zn finger 408..427 CDD:275368 7/18 (39%)
zfp64NP_001373446.1 C2H2 Zn finger 95..118 CDD:275368 4/33 (12%)
zf-H2C2_2 110..135 CDD:463886 3/35 (9%)
COG5048 122..>174 CDD:227381 8/51 (16%)
C2H2 Zn finger 126..146 CDD:275368 1/19 (5%)
C2H2 Zn finger 154..174 CDD:275368 3/19 (16%)
SFP1 <176..260 CDD:227516 18/112 (16%)
C2H2 Zn finger 182..202 CDD:275368 3/48 (6%)
C2H2 Zn finger 210..230 CDD:275368 6/19 (32%)
zf-H2C2_2 222..246 CDD:463886 4/23 (17%)
C2H2 Zn finger 238..257 CDD:275368 5/18 (28%)
C2H2 Zn finger 323..341 CDD:275368 6/17 (35%)
zf-C2H2_6 381..404 CDD:433576 8/22 (36%)
C2H2 Zn finger 384..404 CDD:275368 7/19 (37%)
SP1-4_N <408..>605 CDD:425404 14/59 (24%)

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