DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment: l(3)mbn and Lcp1

Sequence 1:NP_729143.2 Gene:l(3)mbn FlyBaseID:FBgn0002440 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_001260801.1 Gene:Lcp1 FlyBaseID:FBgn0002531 Length:130 Species:Drosophila melanogaster

Alignment Length:87 Identity:20/88 (23%)
Similarity:37/88 (42%) Gaps:20/88 (23%)


  Fly   552 KASGFGGEIGSGRGSASSATGDLYKFKYILDYNGHEETGGRNGDKQGSYFAIGEDAVQRTIEYIA 616
            :|.||...:.:..|...:|:||.:                  |:..|::..|..:.....::|:|
  Fly    42 RADGFDSSLHTSNGIEQAASGDAH------------------GNIHGNFGWISPEGEHVEVKYVA 88

  Fly   617 NEFGFQPHVSWRKLDAKEALPE 638
            ||.|:||..:|  :.....:||
  Fly    89 NENGYQPSGAW--IPTPPPIPE 108

Known Domains:


GeneSequenceDomainRegion External IDIdentity
l(3)mbnNP_729143.2 Chitin_bind_4 31..77 CDD:278791
Chitin_bind_4 575..621 CDD:278791 8/46 (17%)
Lcp1NP_001260801.1 Chitin_bind_4 46..93 CDD:278791 13/65 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10380
RoundUp 00.000 Not matched by this tool.
11.100

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