DRSC/TRiP Functional Genomics Resources

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Protein Alignment: l(3)mbn and Pcp

Sequence 1:NP_729143.2 Gene:l(3)mbn FlyBaseID:FBgn0002440 Length:653 Species:Drosophila melanogaster
Sequence 2:NP_476673.1 Gene:Pcp FlyBaseID:FBgn0003046 Length:184 Species:Drosophila melanogaster

Alignment Length:69 Identity:18/70 (26%)
Similarity:31/70 (44%) Gaps:9/70 (13%)


  Fly   547 GITGTKASGFGGEIGSGRGSASSATGDLYKFKYILDYNGHEETGGRNGDKQGSYFAIGEDAVQRT 611
            ||:.:: .|.||....|..|.:|..|::....|:.|..|:...        |::.....|.:.|:
  Fly    54 GISASQ-EGLGGVAVQGGSSYTSPEGEVISVNYVADEFGYHPV--------GAHIPQVPDYILRS 109

  Fly   612 IEYI 615
            :|||
  Fly   110 LEYI 113

Known Domains:


GeneSequenceDomainRegion External IDIdentity
l(3)mbnNP_729143.2 Chitin_bind_4 31..77 CDD:278791
Chitin_bind_4 575..621 CDD:278791 9/42 (21%)
PcpNP_476673.1 Chitin_bind_4 45..92 CDD:278791 12/39 (31%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 P PTHR10380
RoundUp 00.000 Not matched by this tool.
11.100

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