DRSC/TRiP Functional Genomics Resources

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Protein Alignment Usp47 and Usp48

DIOPT Version :10

Sequence 1:NP_523937.2 Gene:Usp47 / 38644 FlyBaseID:FBgn0016756 Length:1556 Species:Drosophila melanogaster
Sequence 2:XP_006239296.1 Gene:Usp48 / 362636 RGDID:735213 Length:1064 Species:Rattus norvegicus


Alignment Length:704 Identity:159/704 - (22%)
Similarity:265/704 - (37%) Gaps:201/704 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly   395 YVGLVNQAMTCYLNSLLQALFMTPEFRNALYRW-------------EFDNDNEAKNIPYQLQKLF 446
            :|||.|...|||:|:.||..|:..|.|.|||..             ....|.|.:.|...||.||
  Rat   116 FVGLTNLGATCYVNTFLQVWFLNLELRQALYLCPSTCSDYTKGDGIRGGKDYEPQTICEHLQYLF 180

  Fly   447 LNLQTSPKAAVETTDLTRSFGWDSTEAWQQHDIQELCRVMFDALE---HKFKNTKQANLISNLYE 508
            ..||.|.:..::.:...::.|.|:   .||.|.||..::....||   .|.||....|::...:.
  Rat   181 ALLQNSNRRYIDPSGFVKALGLDT---GQQQDAQEFSKLFMSLLEDTLSKQKNPDVRNVVQQQFC 242

  Fly   509 GKMNDYVKCLECNTEKTREDTFLDIPLPVRPFGSSSAYGSIEEALRAFVQPETLDGNNQYLCEKC 573
            |:......|.:|..|......|.::.|.::      .:..:.:.:..|::.|.|:|:|:|.||.|
  Rat   243 GEYAYVTVCSQCGRESKLVSKFYELELNIQ------GHKQLTDCISEFLKEERLEGDNRYFCENC 301

  Fly   574 KKKCDAHKGLHFKSFPYILTLHLKRFDFDYQTMHRIKLNDRVTFPQTLNLNTFINRSGNSGEQNS 638
            :.|.:|.:.:...|.|..|.|.|.||.||.||.|:.|||..:.|.::|::..::...|       
  Rat   302 QSKQNATRKIRLLSLPCTLNLQLMRFVFDRQTGHKKKLNAYIGFSESLDMEPYVEHKG------- 359

  Fly   639 QLNGTVDDCSTADSGSAMEDDNLSSGVVTTASSSQHENDLNDEDEGIDMSSSTSKSAKQGSGPYL 703
                                                                         |.::
  Rat   360 -------------------------------------------------------------GSFV 363

  Fly   704 YELFAIMIHSG-SASGGHYYAYIKDFDNNEWFCFNDQNVTSI----TQEDIQRSFGGPNGSY--- 760
            |||.|::||.| ||..|||.|::||..:.:|:.|||:::..:    .|..|:.....|:.|.   
  Rat   364 YELSAVLIHRGVSAYSGHYIAHVKDPQSGDWYKFNDEDIEKMEGKKLQLGIEEDLAEPSKSQTRK 428

  Fly   761 --YSSAYTSSTNAYMLMYRQVDAKRNELVAKVADFPEHIKTLLPKLHSE-EETRVSRL------- 815
              .......|.|||||:||....::|..:.:|   |..::.|:.:.:|: ||..|...       
  Rat   429 PKCGKGTHCSRNAYMLVYRLQTQEKNHTMVQV---PAFLQELVDRDNSKFEEWCVEMAEMRRQSV 490

  Fly   816 ----GRHITVTDL--ALPDLYKPRVYFYNPSLKK------------------------------M 844
                .:|..|.:|  .||...:|..:.....|:|                              |
  Rat   491 DKGRAKHEEVKELYQRLPAGAEPYEFVSLEWLQKWLDESTPTKPIDNNACLCSHDKLHPDKISIM 555

  Fly   845 KITRVYVSQSFNINLVLMSAY---EMLNVEQFAP---LSRCRLVAYNSSMDTIIQSLESCTDPAL 903
            |....|.:..|      .|.|   ..|.|:....   :.|||::...:.::...:::.:.....:
  Rat   556 KRISEYAADIF------YSRYGGGPRLTVKALCKDCVVERCRILRLKNQLNEDYKTVNNLLKATM 614

  Fly   904 ----------TELRAAQNYSLDFLLEYRAEDQEFEVYPPNGITWYVFKVDLSTMAMDGPFLVYSA 958
                      :.||:.:..:|:.|     ::|:.|....||      |::.|..:.|     .|.
  Rat   615 KGSDGFWVGKSSLRSWRQLALEQL-----DEQDGEAEQSNG------KINGSPFSKD-----ESK 663

  Fly   959 AREREASDVLRRSIAL-----RLHISEQQFLLATVRA------TVPKA--FVSY 999
            ..::|..:.|..:..:     .|.|||.:..|.:..|      ..|||  |.||
  Rat   664 EEKKEEEEELNFNEDILCPHGELSISENERRLVSQEAWSKLQQYFPKAPEFPSY 717

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Usp47NP_523937.2 DUF4045 <122..249 CDD:433066
peptidase_C19C 394..780 CDD:239124 106/410 (26%)
USP47_C 1300..1534 CDD:466158
Usp48XP_006239296.1 Peptidase_C19L 118..447 CDD:239133 103/405 (25%)
DUSP 512..582 CDD:399383 11/75 (15%)
Ubl_USP48 968..1063 CDD:340493
Blue background indicates that the domain is not in the aligned region.

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