DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and Prdm5

DIOPT Version :9

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_038964622.1 Gene:Prdm5 / 689788 RGDID:1588700 Length:599 Species:Rattus norvegicus


Alignment Length:947 Identity:188/947 - (19%)
Similarity:273/947 - (28%) Gaps:411/947 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEGIPTSNYPNDKNK---ARYFWRVQGT 183
            :|....||||.|..     ..|::::..:.:|.:||||.|  ....|.|.::   .|..|.|:|:
  Rat     6 VPDRFALKSSRVQD-----GMGLYTARRVRKGEKFGPFAG--EKRMPEDLDENMDYRLMWEVRGS 63

  Fly   184 RHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYFYTTRDILPNE 248
                       |.:..|.||.::...|||:|:|..|.|....||.|.|..|||::....||..:.
  Rat    64 -----------KGEVLYILDATNPRHSNWLRFVHEAPSQERKNLAAIQEGENIFYLAVDDIETDT 117

  Fly   249 ELMVWYCKDFASRLGYDVDPETTIFGACKQAVEAEEEADEEEEEA--EGEDGKPRYSMPAPEIPP 311
            ||::.|                         ::::.||:|||::|  ...:||            
  Rat   118 ELLIGY-------------------------LDSDVEAEEEEQQALTMAREGK------------ 145

  Fly   312 DVAVSHITYVMGLHLPVGAGNGPANGSV-AGSVSGATPPPPTATPCCRRSSPPAHVST------- 368
               |.|                 :.|.: |||..........|.|.|..|.|...|.|       
  Rat   146 ---VDH-----------------SKGQLAAGSKGHLGCEEDFACPQCESSFPSEEVLTEHLQSLH 190

  Fly   369 ---------TTSTCNAHHP-------HIQHGRHASVIIGQDRSPMASSDKDTAGSPLSGLD---- 413
                     ....|....|       |.:  :|.....|..|   .....|:.|..|...|    
  Rat   191 QKPTGEKEFKCENCGKKFPVRQALQRHFE--QHQKACRGDAR---FVCKVDSCGKRLKSKDALKR 250

  Fly   414 -----HQMTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESEHNYV------LDCSKKAIA 467
                 |...|:...:.||      .:..|         .|..|..||..:      .:|.||.|:
  Rat   251 HRENVHTGDPKRKLICSV------CNRRC---------TSLSSLQEHRKIHEIFDCQECMKKFIS 300

  Fly   468 PKETVIAQAQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNKT 532
                                 ||.....||:||.                   |.|...|..|| 
  Rat   301 ---------------------ANQLKRHMITHSE-------------------KRPYNCEICNK- 324

  Fly   533 CVKQEPSLKEVDQEMSLPQEEEEDQVMHPEPDSICPSTTTHLGDEHMLMMERERERERERIQERE 597
                  |.|.:||..:       .:|:|.|                                   
  Rat   325 ------SFKRLDQVGA-------HKVIHSE----------------------------------- 341

  Fly   598 PSNQQPASSTVIVLEHNSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSILETILTSQHRLEA 662
                                        .|||                                 
  Rat   342 ----------------------------DKPY--------------------------------- 345

  Fly   663 AAAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQNPEQLSSSAVVVGEQEM 727
                  .|:...                 |...:.|.......::..:.|.|..           
  Rat   346 ------QCKLCG-----------------KGFAHRNVYKNHKKTHSEERPFQCD----------- 376

  Fly   728 TRATMIKGECSP---PPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAATSTFH 789
                    ||..   .|.|...|.:|.:..|                               ||.
  Rat   377 --------ECKALFRTPFSLQRHLLIHNSER-------------------------------TFK 402

  Fly   790 SPPHSSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDG 854
            .  |...:.|.|:        ...|:|:     |:::          :|....|.          
  Rat   403 C--HHCDATFKRK--------DTLNVHV-----QVVH----------ERHKKYRC---------- 432

  Fly   855 NSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFK 919
            ..|  |.:.::|:.|.|.        .|...|:....|..|.:.|.....|:||:|:|:||||::
  Rat   433 ELC--SKAFVTPSVLRSH--------KKTHTGEKEKVCPYCGQKFASSGTLRVHIRSHTGERPYQ 487

  Fly   920 CNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFT 984
            |..|.|.|::...|:.|...||.|||:||..|.|.||....|..|.|.|:|:||:.||:|...|:
  Rat   488 CPYCEKGFSKNDGLKMHIRTHTREKPYQCSECSKAFSQKRGLDEHKRTHTGEKPFQCDVCDLAFS 552

  Fly   985 QFVHLKLHKRLHTNDRPYV-CQGCDKKYISASGLRTH 1020
            ....|..||..|..:||.. |..|.||:.....|:.|
  Rat   553 LKKMLIRHKMTHNPNRPMAECHFCHKKFTRNDYLKVH 589

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 SET 133..260 CDD:214614 37/129 (29%)
C2H2 Zn finger 892..912 CDD:275368 7/19 (37%)
zf-H2C2_2 904..929 CDD:290200 13/24 (54%)
C2H2 Zn finger 920..940 CDD:275368 6/19 (32%)
zf-H2C2_2 932..957 CDD:290200 12/24 (50%)
C2H2 Zn finger 948..968 CDD:275368 8/19 (42%)
zf-H2C2_2 960..985 CDD:290200 11/24 (46%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 6/17 (35%)
Prdm5XP_038964622.1 PR-SET_PRDM5 2..128 CDD:380967 42/164 (26%)
C2H2 Zn finger 169..190 CDD:275368 6/20 (30%)
COG5048 186..590 CDD:227381 125/692 (18%)
C2H2 Zn finger 201..221 CDD:275368 3/21 (14%)
C2H2 Zn finger 233..256 CDD:275368 4/22 (18%)
C2H2 Zn finger 266..286 CDD:275368 7/34 (21%)
C2H2 Zn finger 291..311 CDD:275368 8/40 (20%)
C2H2 Zn finger 319..339 CDD:275368 8/33 (24%)
C2H2 Zn finger 347..367 CDD:275368 3/36 (8%)
C2H2 Zn finger 375..395 CDD:275368 5/38 (13%)
C2H2 Zn finger 403..420 CDD:275368 4/26 (15%)
C2H2 Zn finger 432..452 CDD:275368 6/39 (15%)
C2H2 Zn finger 460..480 CDD:275368 7/19 (37%)
C2H2 Zn finger 488..508 CDD:275368 6/19 (32%)
C2H2 Zn finger 516..536 CDD:275368 8/19 (42%)
C2H2 Zn finger 544..564 CDD:275368 7/19 (37%)
C2H2 Zn finger 573..594 CDD:275368 6/17 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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