DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm5

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:NP_001002301.2 Gene:prdm5 / 432371 ZFINID:ZDB-GENE-040708-1 Length:634 Species:Danio rerio


Alignment Length:923 Identity:178/923 - (19%)
Similarity:283/923 - (30%) Gaps:370/923 - (40%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 LPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPFEG-------IPTSNYPNDKNKARYFWR 179
            :|....||||.|..     ..|::::..:.:|.:||||.|       :..|..|      |..|.
Zfish     8 VPDRFVLKSSQVQD-----GMGLYTTRTVKKGEKFGPFAGEKRMLGDLDESMDP------RLMWE 61

  Fly   180 VQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYFYTTRDI 244
            |:|.           |.|..|.||.|:...:||:|:|..|.|....||.|.|..|||::....||
Zfish    62 VRGN-----------KGDVLYILDASNPRHANWLRFVHQAPSQEQKNLAAIQDGENIFYLAVDDI 115

  Fly   245 LPNEELMVWYCKDFASRLGYDVDPETTIFGACKQAVEAEEEADEEEEEAEGEDGKPRYSMPAPEI 309
            ..:.||::.|         .|.|            :|.|||..|||::.:.||   ..|..:.::
Zfish   116 ETDTELLIGY---------LDSD------------MEEEEEDLEEEQDIKDED---ENSKDSKQL 156

  Fly   310 PPD--VAVSHITYVMGLHLPVGAGNGPANGSVAGSVSGATPPPPTATPC--CRRSSPPAHVSTTT 370
            ..|  :.:....|                                  ||  |..|.|...|.   
Zfish   157 SADTELMIKKEDY----------------------------------PCLLCESSFPSEDVL--- 184

  Fly   371 STCNAHHPHIQHGRHASVIIGQDRSPMASSDKDTAGSPLSGLDHQMTPQDGSVRSVRSDEGYHSN 435
                |.|....|.|.::    :|:.....|                   .|....||.....|..
Zfish   185 ----AEHLQSLHNRGSA----EDKEFKCRS-------------------CGKEFPVRQALQRHLL 222

  Fly   436 ECHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKPSSSPPAVVMANTTTNSMISHS 500
            .|.|        ||.|..:.:....|          |:......|.|            |.:.|.
Zfish   223 HCTE--------SSSSSGDPSKAYQC----------VLCHGSFSSQS------------SFLQHK 257

  Fly   501 SPTATPICETDKNEYRKFKVKMPLKYEFKNKTC---VKQEPSLKEVDQEMSLPQEEEEDQVMHPE 562
            .     .|:.|:            ::..|.::|   .|.:.:||:                    
Zfish   258 E-----ACKGDE------------RFICKAESCGKRFKSKDALKK-------------------- 285

  Fly   563 PDSICPSTTTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIVLEHNSGGQARTIVPLSK 627
                      |.|:.|:                                    ||..|.:|    
Zfish   286 ----------HKGNIHI------------------------------------GGARRKLV---- 300

  Fly   628 PYYEPDPPGERYMRFGQPSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSPTEMAYSYKK 692
                       .....:..||.|.   ..:||........:||.:...:|   ........::.:
Zfish   301 -----------CTICNKKCSSSLN---LQEHRKVHEVFDCDACDKKFIST---NQLKRHMITHSE 348

  Fly   693 SQRYGNAVSPDSSSNLGQNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIFSPSRHA 757
            .:.|...:...|...|    :|.::..::..|.:..:..:...|.:       |.||        
Zfish   349 KRPYTCEICSRSFKRL----DQATAHKIIHSEDKPYKCKLCWKEFA-------HRNV-------- 394

  Fly   758 AYLGAGEAGGHSPSPGYPGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLHLLQTST 822
                               |.:         |...||...||..:...:          |.:|..
Zfish   395 -------------------YKN---------HKKTHSEERPFQCEECKA----------LFRTPF 421

  Fly   823 QMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLASRGYRSLPYPLKKKDGK 887
            .:..|.|:.                                                     :.:
Zfish   422 SLQRHLLIH-----------------------------------------------------NNE 433

  Fly   888 MHYECNVCCKTFGQLSNLKVHLR-THSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDIC 951
            ..::|:.|..||.:...|.||:: .|.|.:.:||::|.|:|...:.|:.|...|||||...|..|
Zfish   434 RTFKCDHCDATFKRKDTLNVHIQVVHDGHKKYKCDLCEKAFVTPSVLKSHKKTHTGEKEKICPYC 498

  Fly   952 KKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDKKYISASG 1016
            .::|:|...|:.|:|.|:|::||.|..|.:.|::...||:|.|.||.::||.|..|:|.:....|
Zfish   499 GQKFASNGTLRVHIRSHTGERPYQCPYCDKAFSKNDGLKMHIRTHTREKPYKCSECNKAFSQKRG 563

  Fly  1017 LRTHWKT-TSCKP 1028
            |..|.:| |..||
Zfish   564 LDEHMRTHTGEKP 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964 43/146 (29%)
zf-C2HE <871..912 CDD:465082 7/41 (17%)
C2H2 Zn finger 892..912 CDD:275368 7/20 (35%)
zf-H2C2_2 904..929 CDD:463886 10/25 (40%)
C2H2 Zn finger 920..940 CDD:275368 6/19 (32%)
SFP1 <938..1020 CDD:227516 32/81 (40%)
C2H2 Zn finger 948..968 CDD:275368 7/19 (37%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 6/18 (33%)
prdm5NP_001002301.2 PR-SET_PRDM5 4..130 CDD:380967 45/164 (27%)
C2H2 Zn finger 171..192 CDD:275368 7/27 (26%)
C2H2 Zn finger 204..223 CDD:275368 5/37 (14%)
C2H2 Zn finger 240..291 CDD:275368 15/119 (13%)
COG5048 266..626 CDD:227381 92/508 (18%)
C2H2 Zn finger 301..321 CDD:275368 5/22 (23%)
C2H2 Zn finger 326..346 CDD:275368 3/22 (14%)
C2H2 Zn finger 354..374 CDD:275368 3/23 (13%)
C2H2 Zn finger 382..402 CDD:275368 6/62 (10%)
C2H2 Zn finger 410..430 CDD:275368 4/29 (14%)
C2H2 Zn finger 438..459 CDD:275368 7/20 (35%)
C2H2 Zn finger 467..487 CDD:275368 6/19 (32%)
C2H2 Zn finger 495..515 CDD:275368 7/19 (37%)
C2H2 Zn finger 523..543 CDD:275368 7/19 (37%)
C2H2 Zn finger 551..571 CDD:275368 6/19 (32%)
C2H2 Zn finger 579..599 CDD:275368
C2H2 Zn finger 608..625 CDD:275368
Blue background indicates that the domain is not in the aligned region.

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