DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm1a

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:NP_955809.2 Gene:prdm1a / 323473 ZFINID:ZDB-GENE-030131-2193 Length:776 Species:Danio rerio


Alignment Length:1058 Identity:312/1058 - (29%)
Similarity:414/1058 - (39%) Gaps:364/1058 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 QDYDVTRMREEDFERLAVYLVPDVQAERGLPN----RADKTLPRSLTLKSSMVYSTPNVKTEGVW 145
            :|.|:|:..|::||....|:|.|...|..|.|    ||:.:|||:|..|    :...:.:..||.
Zfish    37 EDVDMTKWTEDEFEEKCTYIVKDHTWEGPLENTDLTRAEASLPRNLAFK----HPADSKEVIGVV 97

  Fly   146 SSGVIPRGTRFGPF--EGIPTSNYPNDKNKARYFWRVQGTRHITYGNIKIFKDDDY-YYLDGSDR 207
            |...||:||||||.  |.....|.|.|.|: :||||             |:.|.:: :::||.|.
Zfish    98 SREYIPKGTRFGPLVGESYTAENVPKDANR-KYFWR-------------IYSDGEFHHFVDGLDE 148

  Fly   208 SQSNWMRYVASAYSLSVMNLVACQHQENIYFYTTRDILPNEELMVWYCKDFASRLGYDVDPETTI 272
            .:|||||||..|:|....||.|||:..||||||.:.|..::||:||||.:||.||.|....|..:
Zfish   149 EKSNWMRYVNPAHSQQEQNLAACQNGMNIYFYTVKAIPADQELLVWYCPEFARRLNYPASGEIMM 213

  Fly   273 FGACKQAVEAEEEADEEEEEAEGEDGKPRYSMPAPEIPPDVAVSHITYVMGLHLPVGAGNGPANG 337
            ....:..:||:::|.|.:...:.|..       ..||..||          |..|          
Zfish   214 QKLKQSLIEAKQQATEVKHPVKREHS-------VSEILKDV----------LQEP---------- 251

  Fly   338 SVAGSVSGATPPPPTATPCCRRSSPPAHVSTTTSTCNAHHPHIQHGRHASVIIGQDRSPMASSDK 402
                     :.|.||...|.:....|.:.|       |.:|                 |..|.::
Zfish   252 ---------SRPLPTRPRCPKSPDRPLYPS-------AVYP-----------------PRPSLNE 283

  Fly   403 D-TAGSPLSGLDHQMTPQDGSVRSVRSDEGYHSNECHEDGLTPPEDSSDSESEHNYVLDCSKKAI 466
            | ...:.:.||            ..||    |: :|   .:||      |.|.|:          
Zfish   284 DFLKSTTVFGL------------PTRS----HT-QC---SVTP------SPSAHS---------- 312

  Fly   467 APKETVIAQAQKPSSSPPAVVMANTTTNSMISHSSPTATPICETDKNEYRKFKVKMPLKYEFKNK 531
                       .|..||               .||||:..|                        
Zfish   313 -----------SPERSP---------------GSSPTSASI------------------------ 327

  Fly   532 TCVKQEPSLKEVDQEMSLPQEEEEDQVMHPEPDSICPSTTTHLGDEHMLMMERERERERERIQER 596
                 ||      :|..||               ..|:.... |..|.                 
Zfish   328 -----EP------REAFLP---------------FSPALYNR-GLNHY----------------- 348

  Fly   597 EPSNQQPASSTVIVLEHNSGGQARTIVPLSKPYYEPDPPGERYMRFGQPSSSILETILTSQHRLE 661
              ....||.                    |.|:| |:|...||:....|.||:            
Zfish   349 --PGYSPAG--------------------SMPFY-PNPHYSRYLMHHYPVSSL------------ 378

  Fly   662 AAAAAANACRQANAATPPPTSPTEMAYSYKKSQRYGNAVSPDSSSNLGQNPEQLSSSAVVVGEQE 726
                           :.|.|......:.|   ..|.:.|.|    ::...|..|||        |
Zfish   379 ---------------SGPSTLGGIFPHMY---PFYSSLVPP----HVPFPPSMLSS--------E 413

  Fly   727 MTRATMIKGECSPPPPSHHHHNVIFSPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAATSTFHSP 791
            .:|..|:      ||.|....:::. |:..:|:                      :||||....|
Zfish   414 GSRQFML------PPDSPAPRDILL-PAATSAF----------------------SAATSLKDKP 449

  Fly   792 PHSSHSPFDRQSNASSGAGSATNLHLLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNS 856
            .|....|: ..:..|..||||.:...:.|                        .|.|::.    |
Zfish   450 LHGHGHPY-APAGGSPTAGSAASTGCIPT------------------------KPTSAIL----S 485

  Fly   857 CPRSGSP---LSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPF 918
            ..||...   ||.....|.||:||.|||||::||:.||||||.||||||||||||||.|||||||
Zfish   486 TSRSEDEAINLSKMKRGSTGYKSLDYPLKKQNGKIKYECNVCTKTFGQLSNLKVHLRVHSGERPF 550

  Fly   919 KCNVCTKSFTQLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKF 983
            ||..|.|.||||||||||:|||||||||:|.:|.||||||||||||||||||:|||.|.:||.||
Zfish   551 KCQTCNKGFTQLAHLQKHYLVHTGEKPHECQVCHKRFSSTSNLKTHLRLHSGEKPYQCKICPAKF 615

  Fly   984 TQFVHLKLHKRLHTNDRPYVCQGCDKKYISASGLRTHWK--------TTSC---KPNNLEEE--- 1034
            ||||||||||||||.:||:.|..|...||..|.||.|.|        :.||   :.|.:.||   
Zfish   616 TQFVHLKLHKRLHTRERPHQCPHCHHNYIHLSSLRFHLKGYCLAVSPSPSCSLDELNRVNEEIER 680

  Fly  1035 --LAMAAAATSECLDKDHPEPDSREAYEQLTQHM--HPAVHPGLRHLSSGGQSPPRLIPLGNHMA 1095
              ::..|....|....|......::.:..|.|.|  ..:.|.|    |:||...||...|..:..
Zfish   681 FDISDNADRLEEMEGFDVEGMVEKQIFGLLWQEMDFKASYHKG----STGGDLHPRAPALSAYHL 741

  Fly  1096 PQQQSHQQQQQQHQQQGV 1113
            .:..|.....:.|:...:
Zfish   742 NEHDSEASVIKVHRSSPI 759

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964 59/144 (41%)
zf-C2HE <871..912 CDD:465082 32/40 (80%)
C2H2 Zn finger 892..912 CDD:275368 18/19 (95%)
zf-H2C2_2 904..929 CDD:463886 19/24 (79%)
C2H2 Zn finger 920..940 CDD:275368 14/19 (74%)
SFP1 <938..1020 CDD:227516 60/81 (74%)
C2H2 Zn finger 948..968 CDD:275368 16/19 (84%)
C2H2 Zn finger 976..996 CDD:275368 16/19 (84%)
C2H2 Zn finger 1004..1023 CDD:275368 9/26 (35%)
prdm1aNP_955809.2 PR-SET_PRDM1 76..203 CDD:380964 59/144 (41%)
PTZ00449 <236..505 CDD:185628 96/581 (17%)
COG5048 <517..634 CDD:227381 95/116 (82%)
C2H2 Zn finger 524..544 CDD:275368 18/19 (95%)
C2H2 Zn finger 552..572 CDD:275368 14/19 (74%)
C2H2 Zn finger 580..600 CDD:275368 16/19 (84%)
C2H2 Zn finger 608..628 CDD:275368 16/19 (84%)
C2H2 Zn finger 636..654 CDD:275368 8/17 (47%)

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