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Protein Alignment Blimp-1 and CG42726

DIOPT Version :9

Sequence 1:	NP_001261442.1	Gene:	Blimp-1 / 38638	FlyBaseID:	FBgn0035625	Length:	1216	Species:	Drosophila melanogaster
Sequence 2:	NP_732017.3	Gene:	CG42726 / 318709	FlyBaseID:	FBgn0261679	Length:	441	Species:	Drosophila melanogaster

Alignment Length:	353	Identity:	94/353 - (26%)
Similarity:	147/353 - (41%)	Gaps:	83/353 - (23%)

- Green bases have known domain annotations that are detailed below.

  Fly   881 LKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKP 945
            |||      :.|..|.:.|...|:||.||.:|..:....|:||.|||.|...||:|.|.|..||
  Fly    98 LKK------FNCKECGRRFATSSHLKYHLMSHEKQSKHSCSVCHKSFKQPIVLQRHMLTHNQEK- 155

  Fly   946 HQCDICKKRFSSTSNLKTHLRLHS--GQKPYACDLCPQKFTQFVHLKLHKRLH-TNDRPYVCQGC 1007
            |.|.||:|.|...|:|.:||.:||  |.: :.|:||.:.|....:|..|.|.| .|:..::|:.|
  Fly   156 HLCPICQKVFRRKSSLASHLAIHSDLGLQ-FKCELCSKHFQNKANLNQHLRKHDKNNIRHMCKVC 219

  Fly  1008 DKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPD----------SREAY--- 1059
            .|.::..:.||.|.|    :.:|.|.:      :.|.| .|.:.:||          :.|.|
  Fly   220 QKSFLRQTTLRLHMK----RHSNRERQ------SCSLC-GKSYNDPDALGRHLRQHKTAERYRCI 273

  Fly  1060 ---------EQLTQHMHPAVHPGLRHLSSGGQSPPRLIPLGNHMAPQQQSHQQQQQQHQQQGVPP 1115
                     :.:.:|:. ::|||....|:.....||             |..|:....:::....
  Fly   274 QCDITINRKDNMLRHLR-SMHPGCAFASTVEMVTPR-------------SSAQEATTAEERPSQT 324

  Fly  1116 PHLLMTQHSVGPA-PMLLTTASQLPPPPPHHQQNSPSRLLQHGHAHPLQMQQQQQQQQQHSPKGL 1179
            ........|||.. |::|..::.||...|..|       ::.|.|.|           :|.|..
  Fly   325 VRYNSVIQSVGNVEPVMLLQSTPLPSQLPELQ-------MEKGKAVP-----------EHLPLP- 370

  Fly  1180 KSLPESGVYLHGQHV-----QAQESRPS 1202
            ..:||..|.|:.:.:     :...|.||
  Fly   371 DVMPEENVQLYRKIILDLDNEEYSSEPS 398

Known Domains:

Indicated by green bases in alignment.

Gene	Sequence	Domain	Region	External ID	Identity
Blimp-1	NP_001261442.1	PR-SET_PRDM1	120..262	CDD:380964
		zf-C2HE	<871..912	CDD:465082	11/30 (37%)
		C2H2 Zn finger	892..912	CDD:275368	8/19 (42%)
		zf-H2C2_2	904..929	CDD:463886	11/24 (46%)
		C2H2 Zn finger	920..940	CDD:275368	11/19 (58%)
		SFP1	<938..1020	CDD:227516	31/84 (37%)
		C2H2 Zn finger	948..968	CDD:275368	9/19 (47%)
		C2H2 Zn finger	976..996	CDD:275368	7/19 (37%)
		C2H2 Zn finger	1004..1023	CDD:275368	6/18 (33%)
CG42726	NP_732017.3	C2H2 Zn finger	74..94	CDD:275368
		C2H2 Zn finger	103..123	CDD:275368	8/19 (42%)
		COG5048	<112..288	CDD:227381	58/188 (31%)
		C2H2 Zn finger	131..151	CDD:275368	11/19 (58%)
		C2H2 Zn finger	158..178	CDD:275368	9/19 (47%)
		C2H2 Zn finger	187..207	CDD:275368	7/19 (37%)
		C2H2 Zn finger	216..236	CDD:275368	7/23 (30%)
		C2H2 Zn finger	244..264	CDD:275368	5/20 (25%)
		C2H2 Zn finger	272..290	CDD:275368	1/17 (6%)
Blue background indicates that the domain is not in the aligned region.

Information from Original Tools:

Software error:

Can't use an undefined value as an ARRAY reference at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 1034.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

Tool	Simple Score	Weighted Score	Original Tool Information
Tool	Simple Score	Weighted Score	BLAST Result	Score	Score Type	Cluster ID
Compara	1	0.930	-	-
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.