DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm1c

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:XP_017208061.1 Gene:prdm1c / 100150534 ZFINID:ZDB-GENE-080618-3 Length:643 Species:Danio rerio


Alignment Length:945 Identity:209/945 - (22%)
Similarity:301/945 - (31%) Gaps:432/945 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly   116 NRADKTLPRSLTLKSSMVYSTPNVKTEGVWSSGVIPRGTRFGPF-------EGIPTSNYPNDKNK 173
            :||..:|||:|.      ::..|.|..||.::.|||.||..||.       |..|...:|     
Zfish    45 SRAQTSLPRNLR------FTYLNQKVLGVLATEVIPAGTCLGPLQAKHLHPEDTPADVHP----- 98

  Fly   174 ARYFWRVQGTRHITYGNIKIFKDDDYYYLDGSDRSQSNWMRYVASAYSLSVMNLVACQHQENIYF 238
             ::.|||.....:.            :.|...:.|.||||.::.||.|....||...|....|||
Zfish    99 -QHIWRVYSAGRLD------------HLLSCEEESSSNWMCFINSAQSPWQQNLAPFQVGMQIYF 150

  Fly   239 YTTRDILPNEELMVWYCKDFASRLGYDVDPETTIFGACKQAVEAEEEADEEEEEAEGEDGKPRYS 303
            ...:.|:|.|||||....::..                                           
Zfish   151 SAMKVIMPGEELMVGRSLEYRQ------------------------------------------- 172

  Fly   304 MPAPEIPPDVAVSHITYVMGLHLPVGAGNGPANGSVAGSVSGATPPPPTATPCCRRSSPPAHVST 368
                                          |.:.|:  ..||...||||.|              
Zfish   173 ------------------------------PMSSSL--RTSGLKQPPPTHT-------------- 191

  Fly   369 TTSTCNAHHPHIQHGRHASVIIGQDRSPMASSDKDTAGSPLSGLDHQMTPQDGSVRSVRSDEGYH 433
                                                            .|| |.||  :...||.
Zfish   192 ------------------------------------------------DPQ-GKVR--KRKRGYT 205

  Fly   434 SNECHEDGLTPPEDSSDSESEHNYVLDCSKKAIAPKETVIAQAQKPSSSPPAVVMANTTTNSMIS 498
            ..|                     :||...:.....||.:   .||.|           ||:...
Zfish   206 VTE---------------------ILDLDPRTDHHTETPL---NKPFS-----------TNAQSK 235

  Fly   499 HSSPTATPICETDKNEYRKFKVKMPLKYEFKNKTCVKQEPSLKEVDQEMSLPQEEEEDQVMHPEP 563
            |.                                        ::|.:::..|:            
Zfish   236 HE----------------------------------------RKVTRDLQNPK------------ 248

  Fly   564 DSICPSTTTHLGDEHMLMMERERERERERIQEREPSNQQPASSTVIV--LEHNSGGQARTIVPLS 626
              :..|:.|:...:::         :|.......|.:..|..:..|:  :.||        :||.
Zfish   249 --LASSSATYSIFDNI---------QRHVYTSAFPQSSLPRYTLPIIQYMPHN--------IPLQ 294

  Fly   627 KPYYEPDPPGERYMRFGQPSSSILETILTSQHRLEAAAAAANACRQANAATPPPTSPTE-----M 686
            ..:..|              ||:                                |||.     .
Zfish   295 LVHMYP--------------SSL--------------------------------SPTSNRNHFS 313

  Fly   687 AYSYKKSQRYGNAVSPDSSSNLGQNPEQLSSSAVVVGEQEMTRATMIKGECSPPPPSHHHHNVIF 751
            ..|.|||.....|.....:.|..::..:|:.|                   .||..|        
Zfish   314 LVSIKKSNFRNEATDSIKTKNKPEDSIKLAHS-------------------QPPALS-------- 351

  Fly   752 SPSRHAAYLGAGEAGGHSPSPGYPGYPHYGAAATSTFHSPPHSSHSPFDRQSNASSGAGSATNLH 816
                                                     :::||...|..:.     :|.:||
Zfish   352 -----------------------------------------NATHSSLYRADDI-----TAKSLH 370

  Fly   817 LLQTSTQMLNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSPLSPNSLAS--RGYRSLPY 879
               |....||                    ....|.||:|   |.:..|.:::..  :|||||||
Zfish   371 ---TGVASLN--------------------MGRASADGSS---SSTTESHDAIKQTVQGYRSLPY 409

  Fly   880 PLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEK 944
            ||::::||:.|.||||.|.|.||||||||||.||||:|::||:|.:||:||||||||..||||||
Zfish   410 PLQRQNGKIQYTCNVCGKNFSQLSNLKVHLRVHSGEKPYRCNICRRSFSQLAHLQKHIQVHTGEK 474

  Fly   945 PHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHKRLHTNDRPYVCQGCDK 1009
            ||:|.:|.:||||.||||.|||||||::||.|..|...|||.|||:||:|:|...:.:.|..|.:
Zfish   475 PHECHVCARRFSSCSNLKKHLRLHSGERPYVCKQCSASFTQHVHLRLHRRIHATPQSHQCPHCPR 539

  Fly  1010 KYISASGLRTHWKTTSCKPNNLEEELAMAAAATSE 1044
            :|.....|:.|.: ..|..::.....::...|..|
Zfish   540 RYTHICSLQIHLQ-QFCPSSSTTSPASLLGLANKE 573

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964 43/148 (29%)
zf-C2HE <871..912 CDD:465082 28/42 (67%)
C2H2 Zn finger 892..912 CDD:275368 16/19 (84%)
zf-H2C2_2 904..929 CDD:463886 17/24 (71%)
C2H2 Zn finger 920..940 CDD:275368 13/19 (68%)
SFP1 <938..1020 CDD:227516 43/81 (53%)
C2H2 Zn finger 948..968 CDD:275368 13/19 (68%)
C2H2 Zn finger 976..996 CDD:275368 11/19 (58%)
C2H2 Zn finger 1004..1023 CDD:275368 5/18 (28%)
prdm1cXP_017208061.1 SET 49..164 CDD:394802 41/138 (30%)
zf-C2H2 420..442 CDD:395048 17/21 (81%)
C2H2 Zn finger 422..442 CDD:275368 16/19 (84%)
zf-H2C2_2 434..459 CDD:463886 17/24 (71%)
C2H2 Zn finger 450..470 CDD:275368 13/19 (68%)
zf-H2C2_2 462..487 CDD:463886 17/24 (71%)
C2H2 Zn finger 478..498 CDD:275368 13/19 (68%)
zf-H2C2_2 490..515 CDD:463886 15/24 (63%)
C2H2 Zn finger 506..526 CDD:275368 11/19 (58%)
C2H2 Zn finger 534..551 CDD:275368 4/16 (25%)

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