DRSC/TRiP Functional Genomics Resources

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Protein Alignment Blimp-1 and prdm4

DIOPT Version :10

Sequence 1:NP_001261442.1 Gene:Blimp-1 / 38638 FlyBaseID:FBgn0035625 Length:1216 Species:Drosophila melanogaster
Sequence 2:NP_001116215.1 Gene:prdm4 / 100000537 ZFINID:ZDB-GENE-041210-131 Length:822 Species:Danio rerio


Alignment Length:336 Identity:87/336 - (25%)
Similarity:135/336 - (40%) Gaps:93/336 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly   758 AYLGAGEAGGHSPSPGYPGYPHYGAA------------ATSTFHSPPHSSHSPFDRQSNASSGAG 810
            ::||: .|..|||:..:|.:|.:..:            :||   ||....||..:..|::|||.|
Zfish   538 SHLGS-HAQSHSPTQDHPAHPGHSQSHSQDKVTNEPLRSTS---SPQWQCHSDVNEHSSSSSGNG 598

  Fly   811 SATN--------LHLLQTSTQM----LNHPLMQPLTPLQRLSPLRISPPSSLSPDGNSCPRSGSP 863
            ....        .....|||::    :.|..|:|                               
Zfish   599 HGRERKFKCSMCTRAFTTSTKLNVHFMGHMGMRP------------------------------- 632

  Fly   864 LSPNSLASRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFT 928
                                      ::|:.|.|.|...|||:.|||.|:|::.|:|.||.||||
Zfish   633 --------------------------HKCSYCSKAFSDPSNLRKHLRIHTGQKNFRCTVCGKSFT 671

  Fly   929 QLAHLQKHHLVHTGEKPHQCDICKKRFSSTSNLKTHLRLHSGQKPYACDLCPQKFTQFVHLKLHK 993
            |.||::.|.::|.|.|..:||.|.|.|....:||.|:..||..:...|..|.::|.:..|||.|.
Zfish   672 QKAHVESHMVIHIGAKNLKCDHCDKMFVRKQDLKQHMYSHSLDRQINCPKCDKQFLKPDHLKKHL 736

  Fly   994 RLHTNDRPYVCQGCDKKYISASGLRTHWKTTSCKPNNLEEELAMAAAATSECLDKDHPEPDSREA 1058
            ..|...|.::|:.|:|.:::...|..|.|.  ||...:............|..:::..|.:.|||
Zfish   737 NSHEGKRDFICEKCNKGFLTKYHLTRHLKI--CKGPKIGRGATQGEEEEEEDEEEEEEEDEEREA 799

  Fly  1059 YEQLTQHMHPA 1069
                  .:|||
Zfish   800 ------EIHPA 804

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Blimp-1NP_001261442.1 PR-SET_PRDM1 120..262 CDD:380964
zf-C2HE <871..912 CDD:465082 10/40 (25%)
C2H2 Zn finger 892..912 CDD:275368 10/19 (53%)
zf-H2C2_2 904..929 CDD:463886 14/24 (58%)
C2H2 Zn finger 920..940 CDD:275368 11/19 (58%)
SFP1 <938..1020 CDD:227516 26/81 (32%)
C2H2 Zn finger 948..968 CDD:275368 8/19 (42%)
C2H2 Zn finger 976..996 CDD:275368 7/19 (37%)
C2H2 Zn finger 1004..1023 CDD:275368 5/18 (28%)
prdm4NP_001116215.1 zf_PR_Knuckle 342..379 CDD:375871
PR-SET_PRDM4 382..514 CDD:380966
COG5048 <532..752 CDD:227381 73/274 (27%)
C2H2 Zn finger 607..627 CDD:275368 3/19 (16%)
C2H2 Zn finger 635..655 CDD:275368 10/19 (53%)
zf-H2C2_2 647..672 CDD:463886 14/24 (58%)
C2H2 Zn finger 663..683 CDD:275368 11/19 (58%)
C2H2 Zn finger 691..711 CDD:275368 8/19 (42%)
C2H2 Zn finger 719..739 CDD:275368 7/19 (37%)
C2H2 Zn finger 747..766 CDD:275368 5/18 (28%)
Blue background indicates that the domain is not in the aligned region.

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