DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment blanks and Adarb2

DIOPT Version :10

Sequence 1:NP_647966.1 Gene:blanks / 38620 FlyBaseID:FBgn0035608 Length:324 Species:Drosophila melanogaster
Sequence 2:NP_579836.1 Gene:Adarb2 / 117088 RGDID:621519 Length:746 Species:Rattus norvegicus


Alignment Length:335 Identity:79/335 - (23%)
Similarity:126/335 - (37%) Gaps:52/335 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 SAEEDAVAVIP--LADNLKKTAMGGENKSDEKGTVSSEPKALSDQITSSMRVTKNKIADDKSSDV 90
            |..:|.|:::.  ||. .|..:.|..|..||..        ||   |||..|.:|:...:..:..
  Rat    30 SKRKDKVSILSTFLAP-FKYLSPGTTNTEDEDN--------LS---TSSAEVKENRNVSNLGTRP 82

  Fly    91 IT--DDATNGRKKQKKNKK----------AKI----RPLTMPVTSKDALMVLNELKGVTVDNM-- 137
            :.  |.|..|.....|.|:          .|:    :.|:..:|.|:||:.|:|||......|  
  Rat    83 LPPGDWARGGSTPSVKRKRPLEEGNGGHFCKLQLIWKKLSWSMTPKNALVQLHELKPGLQYRMVS 147

  Fly   138 QIKRDHEGKIMARVVVNSKKYEAEGSSVNSARNAACEKALQEIL--TTKMKAVL-----DGPGKS 195
            |....|.......|.||...:|..|.:...|:..|.|.||:..:  ....:|.|     ..|...
  Rat   148 QTGPVHAPVFAVAVEVNGLTFEGTGPTKKKAKMRAAEMALKSFVQFPNAFQAHLAMGSSTSPCTD 212

  Fly   196 LESDEDDILEKM-ASYAIHKLGEEW------KTDDIDVA-----TLYNDLKNKQTSVVEPKKPLP 248
            ..||:.|..:.: ..:......|::      .|:.:..|     .||:.|.....::.:..:..|
  Rat   213 FTSDQADFPDTLFKEFEPSSRNEDFPGCCPVDTEFLSSAYRRGRLLYHTLDLMGQALPDRSRLAP 277

  Fly   249 ETWKNMHPCMVLNYMRPQCTFIVSGGTGTNQN-NTFSMSVCVDNCEFNAEGPSKKAARYKLSALV 312
            ......:|.:|||.:|....::....|..... .:|.|:||||...|...|.|||.|:.:.:...
  Rat   278 GALGERNPVVVLNELRSGLRYVCLSETAEKPRVKSFVMAVCVDGRTFEGSGRSKKLAKGQAAQAA 342

  Fly   313 CNKLFGTDYP 322
            ...||....|
  Rat   343 LQALFDIRLP 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
blanksNP_647966.1 DSRM_SF 120..180 CDD:444671 20/61 (33%)
DSRM_SF 254..314 CDD:444671 18/60 (30%)
Adarb2NP_579836.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..36 2/5 (40%)
R-domain (ssRNA-binding). /evidence=ECO:0000250 23..35 1/4 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 50..105 16/65 (25%)
DSRM_RED2_rpt1 123..196 CDD:380725 21/72 (29%)
DSRM_SF 277..350 CDD:444671 21/72 (29%)
ADEAMc 367..743 CDD:214718
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.