DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tie and Pdgfrl

DIOPT Version :10

Sequence 1:NP_523928.1 Gene:Tie / 38559 FlyBaseID:FBgn0014073 Length:1233 Species:Drosophila melanogaster
Sequence 2:NP_001011921.1 Gene:Pdgfrl / 290771 RGDID:1308028 Length:375 Species:Rattus norvegicus


Alignment Length:227 Identity:43/227 - (18%)
Similarity:63/227 - (27%) Gaps:89/227 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly   849 FERSNIRLKSLLGEGNFGQVWKAEADDLSGHFGATRIVAVKTIRACSAQVSLKDEANIMRKLGSH 913
            |:.|.:.:|.....|....|....||  :|.|....       |.|:..:..:|||    :.||.
  Rat   112 FKDSRLTVKQNERYGQLTLVNSTTAD--TGEFSCWE-------RLCNGYICRRDEA----RTGST 163

  Fly   914 QNVVTLLGACVESEPHMLIMEYAMRGRLLSLLRAARSATNILPASVPGGRSLAPLSPRTLAGFAL 978
            ....|..|......|....:.|         |...|.|  ::|.     |..||.:..||     
  Rat   164 YIFFTEKGELFVPSPSYFDVVY---------LNPDRQA--VVPC-----RVTAPSAKVTL----- 207

  Fly   979 DIACGMEYIAGRRIVHRDLAARNVLLDHNGMCKICDFGMSIDLDAERMRKEQEKNAANDLMRHNA 1043
                           ||:..|:.:..:          |..|..|.:|                  
  Rat   208 ---------------HREFPAKEIPAN----------GTDIVYDMKR------------------ 229

  Fly  1044 HKFKFDFGSRYILQHWQHTFGQGQGQGHCSKD 1075
                   |..|:..|..|     ||..:|..:
  Rat   230 -------GFVYLQPHSDH-----QGVVYCKAE 249

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
TieNP_523928.1 TyrKc 854..1183 CDD:197581 41/222 (18%)
PdgfrlNP_001011921.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 19..63
IG_like 83..>143 CDD:214653 9/32 (28%)
Ig 278..372 CDD:472250
Ig strand B 289..293 CDD:409353
Ig strand C 304..308 CDD:409353
Ig strand E 340..344 CDD:409353
Ig strand F 354..359 CDD:409353
Ig strand G 367..370 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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