DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG1316 and CG7903

DIOPT Version :10

Sequence 1:NP_647887.1 Gene:CG1316 / 38526 FlyBaseID:FBgn0035526 Length:470 Species:Drosophila melanogaster
Sequence 2:NP_651755.2 Gene:CG7903 / 43554 FlyBaseID:FBgn0039730 Length:384 Species:Drosophila melanogaster


Alignment Length:255 Identity:65/255 - (25%)
Similarity:93/255 - (36%) Gaps:86/255 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 EDFREAFSPYGEIEDIWVVKDKHTQENKGIAYVKFSKTSDAAKAQEEMNGKTIGKMDRTLKVLVA 105
            |:.|..|:.||.:.:..|:       |: .|:|....|..|..|...:|| ||.|..   .::|.
  Fly    18 EELRRLFTNYGSVVECDVM-------NR-CAFVHLENTDMAEAAIAALNG-TIFKGQ---PIVVE 70

  Fly   106 ANRNQ---------------------------GSNKSENEQE-KYVRLFIVIPKTATEEDIREEF 142
            |.|.:                           |::|..:|.. .:.|.|        .|::...|
  Fly    71 AGRPKYGPGGGSRGQPGSGDNPGRRPSQVQGGGADKRPHESNTNFKRNF--------REEVGGRF 127

  Fly   143 SQWGDVESVTIVKEKNNGNPKGFGYVRFTKFY-------YAAVAFENCSAK----YKAVFA---- 192
            |..|        ...:|.:...||.||....|       |:.....|.|:.    ::..||    
  Fly   128 SNEG--------PRSSNSSAAKFGPVRNESNYRQQRSAPYSKGPPNNESSNQGQGFRNKFAGGGK 184

  Fly   193 -------EPK-GSTR-TQRDQYG-----RPSEDNPLYSSSGRG-NSNFNGGGSSSGGGGS 237
                   |.: ||.| .|||..|     |..:::|.....|.| ||:|.||.||||||||
  Fly   185 FGGSAGNEGRFGSNRFQQRDNSGPQPGRRNFKNSPTSGYRGGGNNSDFQGGSSSSGGGGS 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG1316NP_647887.1 RRM1_RBM45 25..105 CDD:409801 17/63 (27%)
RRM_SF 122..195 CDD:473069 18/94 (19%)
RRM3_RBM45 267..339 CDD:409803
RRM4_RBM45 383..449 CDD:409804
CG7903NP_651755.2 RRM_SF 6..70 CDD:473069 17/63 (27%)
PABP-1234 <18..173 CDD:130689 38/182 (21%)
Blue background indicates that the domain is not in the aligned region.

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